Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1452 |
Symbol | |
ID | 5322310 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1532678 |
End bp | 1534480 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640790400 |
Product | single-stranded-DNA-specific exonuclease RecJ |
Protein accession | YP_001327132 |
Protein GI | 150396665 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00256801 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00132955 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGACGTTT TGGCGGATCC GATCCAGCGG GCTTTTCTCG GCGTTGAACG CTCTGTAAGC GGACAACGGT GGGTGTCGCG CCTCGATCAG GCGGGCCAGA ACCGTGCACT GGCCATAAGT CAGGTTCACG GCTATTCCGA GCTCATCGCG CGCGTGCTTG CCGGGCGTGG GGTCGGACTT GACGACGCCG GCGCCTTCCT TGATCCGACG CTGCGCGCAC TGATGCCGGA CCCCGATATA TTGACCGATT GCCGCAAGGC TGCCGAGCGG CTTGCAGATG CGATACGCCG CCGCGAGAAG ATCGTGGTTT TTGGCGATTA CGACGTGGAT GGTGCGGCTT CAGCAGCGCT GATGGTGCGT TTCCTGCGCC ATTTCGATCT GACGACCGAG ATATACATCC CCGACCGTAT ATTCGAAGGC TACGGCCCCA ACCCGCAGGC GATCGAACAG TTGATCGATC GGGGCGCGGA ACTGATCGTC ACCGTCGACT GCGGTTCCAC CAGTCACGAA TCGTTTGCAG TGGCGGCAGA GCGCGGGACC GACGTTGTGG TCGTCGACCA CCACCAGGTC GGCTCGACGC TGCCCCCTTG CCATGCACTG GTCAATCCCA ATCGCGAGGA CGATTTGTCG GGCCAGGGGC ACCTTTGTGC TGCTGGCGTC GTTTACCTGG TGCTCGTCAA CACATTGCGC GTGCTGCGCC TGAAGGGCGA TTCGCGCGTC GCGTCCTTCG ACCTCCTTTC GCTGCTCGAC CTTGTGTCGC TCGCGACCGT CTGCGATGTC GTGCCGCTCA AGGGGCTCAA CCGGGCTTAT GTCGTGAAAG GATTGATTGC TGCACGGCAC ATGGGCAATG CGGGTCTCGC GGCGCTCCTG CGCAAGGCGG CGATCGGCGG ACCCGTGACG CCCTATCATC TCGGCTTCCT GCTGGGACCA CGGATAAATG CCGGCGGGCG TATCGGTGAC GCTGCGCTCG GGAGCCGGCT GCTGACCCTC GATGACGCCG CGGAGGCTGA AATCATCGCC GGCCAGCTTG ATGAACTCAA TCGCGATCGC CAGGCGATGG AAGCGGCCAT GCTGGCGGAG GCTGAAGCCG AGGTGCTGGC TGAATACGGG ACAGGCGAGG GCGCGTCCGT AATTATCACT GCCCGGGAGA ATTGGCATCC CGGGATCGTC GGACTGATTG CCGCACGTAT TAAAGAGAAA TTCCGTCGGC CGGCCTTCGC TATCGCCTTC GACCCGAACG GTCGAGGCAC CGGATCCGGC CGTTCGATCA ACGGCTTTGA CATGGGGCGG CTCGTGCGCG CGGCCGTCGA CAGCGGCCTT CTGATCAAGG GTGGCGGGCA TGCAATGGCT GCCGGGCTGA CGGTCGAGAG AGGTAAGCTC GGACAACTTC GGCAATTCTT CGAAGAACGC GCCGAAACTG CAGTTCGCGA TCTCGTGGCC GTCCAAACAC TCAAGGTCGA TGGTGCAATG GCAGCTGCCG GGGCGACGCT GGACCTCGTC GACCTTCTCG ATCAGGCAGG GCCTTACGGC TCAGGGCATC CGCAGCCGCT CTTCGCCTTC CCGCAACATC GGCTGCGGGA CAGCAGGCAG GTCGGCGCCA ATCACGTTAA GGTGACTCTC GAAGGACAGG ACGGCCGTCG AATCGAAGGA ATCGCCTTCC GTGCCACCGA GACGCCGCTG GGCGCGTTCC TGCTTGGCAA TCGCGGCGCT ACGGTCCATG CCGCGGGATC CGTGTCGGCG GATCTCTGGC AGGGAACACG CAAGGTGCAG CTGCGCCTGA CGGATGCTGC GAAAGCCCAT TGA
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Protein sequence | MDVLADPIQR AFLGVERSVS GQRWVSRLDQ AGQNRALAIS QVHGYSELIA RVLAGRGVGL DDAGAFLDPT LRALMPDPDI LTDCRKAAER LADAIRRREK IVVFGDYDVD GAASAALMVR FLRHFDLTTE IYIPDRIFEG YGPNPQAIEQ LIDRGAELIV TVDCGSTSHE SFAVAAERGT DVVVVDHHQV GSTLPPCHAL VNPNREDDLS GQGHLCAAGV VYLVLVNTLR VLRLKGDSRV ASFDLLSLLD LVSLATVCDV VPLKGLNRAY VVKGLIAARH MGNAGLAALL RKAAIGGPVT PYHLGFLLGP RINAGGRIGD AALGSRLLTL DDAAEAEIIA GQLDELNRDR QAMEAAMLAE AEAEVLAEYG TGEGASVIIT ARENWHPGIV GLIAARIKEK FRRPAFAIAF DPNGRGTGSG RSINGFDMGR LVRAAVDSGL LIKGGGHAMA AGLTVERGKL GQLRQFFEER AETAVRDLVA VQTLKVDGAM AAAGATLDLV DLLDQAGPYG SGHPQPLFAF PQHRLRDSRQ VGANHVKVTL EGQDGRRIEG IAFRATETPL GAFLLGNRGA TVHAAGSVSA DLWQGTRKVQ LRLTDAAKAH
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