| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1287 |
|---|
| Symbol | |
|---|
| ID | 5322134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 1383033 |
|---|
| End bp | 1384034 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640790228 |
|---|
| Product | integrase catalytic region |
|---|
| Protein accession | YP_001326972 |
|---|
| Protein GI | 150396505 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2826] Transposase and inactivated derivatives, IS30 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.851033 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCAGT GCTATTTGCA GCTCACCCTT CCCGATCGCC GACGCGTGCA TCAGCTTCTC
GAACGCAAGG TGCCGATTGC TGAGATCGCC CGCCAACTCG GTCGGCATCG ATCGACGATC
TATCGTGAAC TGAAGCGCAA TACCTTTCAT GATGCCGAGT TTCCGGAATA CAGCGGCTAT
TACAGCGGTA TTGCCAACGA CATCTCGAAG GAGCGTCGGC GACGGCTGCG CAAGCTCAGC
CGCCACGCGC AATTACGCGA ACTGGTCATC GAGCAGCTGA AGGCACTTTG GTCGCCGGAG
CAGATCGCCG GCCGTCTGCT TGCCGATGGT GTGAGCGCCG TCCGCGTCTG CACCGAGACG
ATCTATCGCT TCATCTATAG CAAGGAAGAT TATGCGCTGG AGCTCTATCA GCATCTGCCG
GAAGGCCGTC GTAAGCGCCG CCCACGCCGC TCCCGCAAAC CCCGTGACGG CTCGATCCCG
TTGGACTGCA GGATCAGCCA ACGCCCTGAT TTCATTGCCG ATCGCTCTCA GTTCGGCCAC
TGGGAGGGTG ATCTCCTGAT CTTCCGGCGC GACCTTGGTG AAGCCAATGT CACCTCGCTG
GTCGAGCGCA AGAGCCGCTA CACGGTGATG ATCAAGAATG GCAGCCGTCA CTCTCGTCCG
CTCATCGACA AGATCATCGA TGCCTTCTCA CCGCTACCCG CCTTTGCCCG GCAGAGCTTC
ACCTTCGACC GTGGTACCGA GTTTCGCGGT TTCAAGGCTT TGGAAGATGG ACTCGGCGCC
AGGAGCTGGT TTTGCGATCC GAATTCACCG TGGCAGAAAG GCGCGGTCGA GAACACCAAC
AAGCGCATCC GTCGCTTTGT GCCGAGCGAT ACGGACCTGT CCGCCGTCAA CCAGCCGCAA
CTGGTCGCCC TCGCCCACCA TCTCAATTCA CTGCCCAGGA AGTGCCTTGG TTACCGCACG
CCCGCCGAGG TCTTCATGGC CCATTTGCGC GACTGCGGGT AA
|
|---|
| Protein sequence | MSQCYLQLTL PDRRRVHQLL ERKVPIAEIA RQLGRHRSTI YRELKRNTFH DAEFPEYSGY
YSGIANDISK ERRRRLRKLS RHAQLRELVI EQLKALWSPE QIAGRLLADG VSAVRVCTET
IYRFIYSKED YALELYQHLP EGRRKRRPRR SRKPRDGSIP LDCRISQRPD FIADRSQFGH
WEGDLLIFRR DLGEANVTSL VERKSRYTVM IKNGSRHSRP LIDKIIDAFS PLPAFARQSF
TFDRGTEFRG FKALEDGLGA RSWFCDPNSP WQKGAVENTN KRIRRFVPSD TDLSAVNQPQ
LVALAHHLNS LPRKCLGYRT PAEVFMAHLR DCG
|
|---|
| |