Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1262 |
Symbol | |
ID | 5322109 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 1355444 |
End bp | 1356709 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640790203 |
Product | major facilitator transporter |
Protein accession | YP_001326947 |
Protein GI | 150396480 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0631224 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGACC AGAAATTTGT GAAGCGCGGT CTTTTCCTCG TCTTTATGAT CCTCTTCCTC GATATTATGG GTATCGCCAT CATTGTCCCT GTATTGCCGA GCTATCTCGA GGAATTGACG GGGGCGGATG TTGGTGAAGC GGCAATCGAC GGCGGCTGGC TGCTGCTCGT TTATTCGGCG ATGCAGTTCT TCTTCGCGCC GCTCATCGGG AATCTGAGCG ACCGATTCGG GCGCCGGCCG ATCCTTTTGG CCTCCGTGCT GACCTTCGCT ATCGACAACC TGATCTGCGC GCTTGCGACG AGCTACTGGA TGCTTTTCAT CGGGCGCAGC CTTGCCGGGA TCAGCGGCGC GAGTTTCGGC ACCGCGTCCG CTTACATCGC CGATGTCAGC AATGACGAAA ACCGCGCCAA GAACTTCGGG CTGATCGGCA TTGCCTTCGG AACCGGTTTT GCACTGGGCC CGGTCATAGG AGGTGTCCTT GGGGAACTGG GACCAAGGGT GCCCTTTTAT GGTGCCGCAG CGCTGTCGTT CCTCAATTTC GTCATGGGTG CCTTTCTCCT GCCGGAAACG CTCGATCCGG CCAATCGGCG TCGCTTCGAA TGGCGCCGGG CCAATCCGTT CGGCGCGCTC AAGCAGATGC GTCATTACCC GGGTATCGGC TGGGTGGGCC TCGTCTTCTT CCTCTACTGG CTGGCGCACG CCGTCTACCC CGCCGTCTGG TCCTTCGTCG CTTCCTATCG CTATGGGTGG AGCGAAGGGC AGATCGGGCT TTCATTGGGG ATTTTCGGCG TCGGCGGCGC AATCGTCATG GCGCTGGTAC TGCCGCGCGT CGTCCCGGCA TTGGGAGAAA GGCGAACGGC CGCGCTCGGG CTTACATTCA CGGCTCTCGG AATGGCCGGC TATGCTGCTG CCTGGGAAGG CTGGATGGTA TATGCTGTGA TCGTCGCGAC CGCGCTTGAA AGCCTTGCCG ATCCGCCGCT CCGCAGCATA GCGTCGGTCC ATGTCCCGCC CTCCGCACAG GGCGAATTGC AAGGCGCGCT CACCAGTATA TCGAGCATGA CGACGATCAT CGGACCTCTG ATGTTTACGC AGATTTTTGC CTATTTCACT AACCCCGCCG CCACCTATGC CTTTTCCGGG GCTCCCTATG CGGTGGCCGG CTGCCTGATC ATCGCCGCAT TGCTGATATT CCTTGCCAAG GTCCGCACCG GACGGGGTGG CACCTATCGG GATGGGGTGC CCGGCATAGC GGAGGCATCA TCCTGA
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Protein sequence | MIDQKFVKRG LFLVFMILFL DIMGIAIIVP VLPSYLEELT GADVGEAAID GGWLLLVYSA MQFFFAPLIG NLSDRFGRRP ILLASVLTFA IDNLICALAT SYWMLFIGRS LAGISGASFG TASAYIADVS NDENRAKNFG LIGIAFGTGF ALGPVIGGVL GELGPRVPFY GAAALSFLNF VMGAFLLPET LDPANRRRFE WRRANPFGAL KQMRHYPGIG WVGLVFFLYW LAHAVYPAVW SFVASYRYGW SEGQIGLSLG IFGVGGAIVM ALVLPRVVPA LGERRTAALG LTFTALGMAG YAAAWEGWMV YAVIVATALE SLADPPLRSI ASVHVPPSAQ GELQGALTSI SSMTTIIGPL MFTQIFAYFT NPAATYAFSG APYAVAGCLI IAALLIFLAK VRTGRGGTYR DGVPGIAEAS S
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