Gene Smed_1249 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1249 
Symbol 
ID5322096 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1340078 
End bp1340548 
Gene Length471 bp 
Protein Length156 aa 
Translation table11 
GC content59% 
IMG OID640790190 
ProductAsnC family transcriptional regulator 
Protein accessionYP_001326934 
Protein GI150396467 
COG category[K] Transcription 
COG ID[COG1522] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0518927 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.957765 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTCGTAC GCGTCGAGCT CGATGCCATC GATATGAAAA TACTGCGCGA ACTGCAGGAT 
AACGGCCGTA TGACGAATGT GGAACTGGCC GAGAGGGTGG GGATTTCGGC ACCTCCCTGC
CTGCGCCGGG TTCGCAAGCT CGAGGAGGCC GGCGTCATCC GGGGCTATCG CGCGCTTCTG
AATGCCGCCG CGCTTGGATA TGATCTCGTT GCCTTCTGCA TGGTCGGTCT GAAGCACCAG
TCCGACGCCA ATCTGAAGGC CTTTGCCGCC CGCACCGCCT CATGGCCGCT TGTTCGCGAG
GCCTGGATGG TGTCCGGAGA GTCGGACTTT CTGCTGCAGT GCGTGGCCGA GAACCTTGCG
AGCTTTCAGG ATTTCGTTAT TGAAGAACTG ACCGCCACCG AGAATGTCGA TACGGTGCGG
ACGATGCTGA CGATCCGGCA AGTGAAGGAC GCATGTCAGG TAGAAATCTG A
 
Protein sequence
MVVRVELDAI DMKILRELQD NGRMTNVELA ERVGISAPPC LRRVRKLEEA GVIRGYRALL 
NAAALGYDLV AFCMVGLKHQ SDANLKAFAA RTASWPLVRE AWMVSGESDF LLQCVAENLA
SFQDFVIEEL TATENVDTVR TMLTIRQVKD ACQVEI