Gene Smed_1173 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1173 
Symbol 
ID5322019 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1250772 
End bp1251104 
Gene Length333 bp 
Protein Length110 aa 
Translation table11 
GC content60% 
IMG OID640790114 
Productpreprotein translocase, YajC subunit 
Protein accessionYP_001326859 
Protein GI150396392 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1862] Preprotein translocase subunit YajC 
TIGRFAM ID[TIGR00739] preprotein translocase, YajC subunit 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.441411 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.139659 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTATTA CCGAAGCTTT CGCGCAGACG GCGGCCCCTG GGGGCGGCGG CGCCGATATT 
CTGATGTCCA TCCTGCCATT CCTGCTGATT TTCGTGGTCA TGTATTTCCT GATCATCCGG
CCGCAGCGTG CACAGATGAA GCGCCGCGAA GAACTGCTGA AGAACATCCG GCGCGGCGAT
CAGGTCGTCA CCGGCGGTGG TATCGTCGGC AAGGTGACCA AGGTCGTCGA CGATACCGAA
CTCGAGGTGG AAATCGCCGA GGGCACTAAG GTCCGCGTCG TCCGCAGCGG CGTTTCCGAA
GTTCGCGTGA AGGGCGAGCC CGTCAAGGAA TAG
 
Protein sequence
MFITEAFAQT AAPGGGGADI LMSILPFLLI FVVMYFLIIR PQRAQMKRRE ELLKNIRRGD 
QVVTGGGIVG KVTKVVDDTE LEVEIAEGTK VRVVRSGVSE VRVKGEPVKE