Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1019 |
Symbol | |
ID | 5321864 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1089359 |
End bp | 1090351 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640789961 |
Product | RluA family pseudouridine synthase |
Protein accession | YP_001326707 |
Protein GI | 150396240 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.798058 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGGGCA TAGAACACAG GCAGGTGGAT AGCGACGAGG CGGGCATGCG CCTCGACCGC TGGTTCAAGG TGCATTTTCC CGGATTGGGC TTCGGTCCGC TGCAGAAGCT GCTGCGCTCC GGACAGATCC GCGTGGATGG TGCGCGAGCA AAGTCCGATA CGCGCATACA ACCCGGTCAG ACCATCCGCA TTCCGCCGCT TGGCGTCGAT CCCAAGGAAA AGAAAACCGG ACCGATCGGA GGCCGCGACC TGCGTCAATC ACCGGACGGT GAGCTTCTGT CGCGCATGGT GCTTCACGAG GATGCCAAGG TCATCGTGCT CAACAAGCCG CCGGGCCTTG CAGTACAGGG CGGTTCGGGC GTCAATCGGC ACATAGACAA GATGCTGGAG GCCTGGACGA GCCAGAAGGG CGAAAAGCCG CGCCTGGTCC ATCGTCTCGA TCGCGACACG TCGGGCGTAC TCGTCATTGC CCGGACGCGC GGTGCCGCGC AACAACTGAC CGCTGCCTTT CGCGAACGCG ATACGAAAAA GACCTATTGG GCGTTGGTCA GGGGCGTGCC GCGCAAGCGC GAAGACAAGA TTTCCACCTG GGTGGTCAAG GAACAGACGC CGGACGGCGA CCGAGTGCGG ATCGCCAAGC ATGGCGAGGA TGGCGCCGAC CATGCCATCT CCTTTTACCG GATCGTCGAG CAGGCCGGTC AGAACCTGGC CTGGCTTGAA ATGGAACCCT ATACCGGACG CACGCATCAG TTGCGCGTCC ACGCCGCGCA TATCGGCCAC CCCATTATCG GCGATCCGAA ATATTTCGAA GCCGACGTCA ATTGGACCTT CCCCGGTGGT ATGCAGAACC GCCTGCACCT TCACGCACGG CATATAGACA TTCCGCATCC GAACGGAGGA AGGCTGAAGG TGACGGCTCC CCTGCCCCAG CACATGATGC AGAGCTGGAA CCTGCTCGGC TTCGAGGAGA ACGCCGCAGA CGAGGAAGAG TGA
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Protein sequence | MAGIEHRQVD SDEAGMRLDR WFKVHFPGLG FGPLQKLLRS GQIRVDGARA KSDTRIQPGQ TIRIPPLGVD PKEKKTGPIG GRDLRQSPDG ELLSRMVLHE DAKVIVLNKP PGLAVQGGSG VNRHIDKMLE AWTSQKGEKP RLVHRLDRDT SGVLVIARTR GAAQQLTAAF RERDTKKTYW ALVRGVPRKR EDKISTWVVK EQTPDGDRVR IAKHGEDGAD HAISFYRIVE QAGQNLAWLE MEPYTGRTHQ LRVHAAHIGH PIIGDPKYFE ADVNWTFPGG MQNRLHLHAR HIDIPHPNGG RLKVTAPLPQ HMMQSWNLLG FEENAADEEE
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