| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0944 |
|---|
| Symbol | gatA |
|---|
| ID | 5321785 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1019935 |
|---|
| End bp | 1021416 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640789884 |
|---|
| Product | aspartyl/glutamyl-tRNA amidotransferase subunit A |
|---|
| Protein accession | YP_001326634 |
|---|
| Protein GI | 150396167 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
|---|
| TIGRFAM ID | [TIGR00132] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.200155 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACC TTACGAGCCT CACGATCGCA GAAGCCCGCG CGAAGCTTTC CGACAAGGAA
ATCACCGCGG TCGAGTTGAC CGACGCCTAT CTTGCCGCGA TCGAGGCAGC CAATGAGACG
ATCAACGCCT ATATCGCGGT CACGCCCGAT AAGGCACGCG AGATGGCAAA AGCCTCTGAC
GCGCGCATCG GGGCCGGCAA GGCGGGTGCG CTCGAGGGTA TACCGCTCGG GATCAAGGAT
CTCTTCGGCA CGCAGGGCCT CCATACGCAG GCGTGCAGCC ATATACTCGA CGGGTTCAGG
CCGCACTATG AATCAACTGT CACCCAGAAC CTGTGGAACG ACGGCGCCGT CATGCTCGGC
AAGCTGAACA TGGACGAGTT CGCGATGGGC TCGTCGAACG AGACCTCCTA TTACGGGCCG
GTCAAGAACC CGTGGCGTGC CAAGGAATCC AATCTCGACC TGGTTCCGGG CGGGTCTTCC
GGCGGTTCTG CGGCTGCGGT CGCTGCACGC CTGTGCGCCG GAGCCACGGC GACGGACACC
GGTGGCTCCA TCCGCCAGCC GGCGGCATTC ACCGGAACCG TCGGCATCAA GCCGACCTAT
GGGCGCTGCT CGCGCTGGGG CGTGATCGCC TTCGCGTCGT CGCTCGATCA GGCGGGCCCG
ATCGCTCGCG ACGTGCGCGA TGCCGCGATC CTCCTGAAGT CGATGGCGAG CGTCGATCCG
AAGGATACGA CATCCGTCGA TCTGCCGGTG CCGGATTACG AAGCGGCGAT CGGCCAGTCG
ATCAAGGGCA TGCGGATAGG GATCCCGAAG GAATACCGCG TCGAAGGCAT GCCCGAGGAA
ATCGAGGCGC TCTGGCAGCA GGGCGTTGCT TGGCTCAAGG ACGCCGGCGC CGAAATCGTC
GATATCTCGC TGCCGCATAC CAAATACGCG CTGCCCGCCT ACTACATCGT CGCTCCAGCC
GAAGCCTCGT CCAACCTCGC GCGCTACGAC GGCGTTCGTT ATGGCCTTCG CGTCGACGGC
AAGGACATCG TCGACATGTA CGAGAAGACG CGGGCGGCGG GCTTCGGGCA AGAGGTCAAG
CGCCGCATCA TGATCGGCAC CTATGTTCTC TCTGCGGGAT ATTACGATGC CTATTACCTT
CGCGCGCAGA AAGTCCGCAC CCTGATCAAG CGCGACTTCG AACTCGCCTT CCACGCCGGC
GTCGATGCTA TCCTGACGCC GGCCACGCCG TCCTCCGCCT TCGGCATCGC CGATGAAGAC
CTCGCATCAG ACCCGGTGAA GATGTATCTG AACGACATCT TTACCGTGAC GGTGAACATG
GCCGGGCTTC CGGGCATCGC AGTGCCGGGC GGGCTCGATC ACAAGGGGTT GCCGCTCGGT
TTGCAGCTCA TCGGCAAACC CTTCGACGAA GAAACGCTGT TCAAGACGGC TCACGTCATC
GAGCAGGCGG CTGGCCGCTT CACGCCCTCC AAATGGTGGT GA
|
|---|
| Protein sequence | MTDLTSLTIA EARAKLSDKE ITAVELTDAY LAAIEAANET INAYIAVTPD KAREMAKASD
ARIGAGKAGA LEGIPLGIKD LFGTQGLHTQ ACSHILDGFR PHYESTVTQN LWNDGAVMLG
KLNMDEFAMG SSNETSYYGP VKNPWRAKES NLDLVPGGSS GGSAAAVAAR LCAGATATDT
GGSIRQPAAF TGTVGIKPTY GRCSRWGVIA FASSLDQAGP IARDVRDAAI LLKSMASVDP
KDTTSVDLPV PDYEAAIGQS IKGMRIGIPK EYRVEGMPEE IEALWQQGVA WLKDAGAEIV
DISLPHTKYA LPAYYIVAPA EASSNLARYD GVRYGLRVDG KDIVDMYEKT RAAGFGQEVK
RRIMIGTYVL SAGYYDAYYL RAQKVRTLIK RDFELAFHAG VDAILTPATP SSAFGIADED
LASDPVKMYL NDIFTVTVNM AGLPGIAVPG GLDHKGLPLG LQLIGKPFDE ETLFKTAHVI
EQAAGRFTPS KWW
|
|---|
| |