| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0931 |
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| Symbol | |
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| ID | 5321772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 1005520 |
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| End bp | 1007889 |
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| Gene Length | 2370 bp |
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| Protein Length | 789 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640789871 |
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| Product | ribonuclease R |
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| Protein accession | YP_001326621 |
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| Protein GI | 150396154 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACCAGGA TTCCGCGCGA CCCGACCGAT ACGCCCGCAA AGGGTGCAGG CAAGAAAAAC
GGCCGCGCGG CGAGGACGGC ACCGGCCGGG GAGAAGGAGA CGATCGTCCA GGGCGCCGTT
CCTTCCCGCG AGGTGCTGAT GCGCTTCATC GCGGAGAACC CGCAGCACGC CTCAAAGCGC
GATATCGCCA AGGCATTCGG CCTCAAGGGC GAGGCACGGG TGGAGCTCAA GACGCTGCTT
CGTTCACTCG AGGCAGACGG GCTCGTGGAG AAGAAGCGAA AGTCGTTGAT CCGCCCCGGC
GGGCTGCCGC CAGTCACCGT TCTGGACATT ACCATTCGCG ACATCGACGG CGATCTGATC
GGCCGGCCGG CCGAATGGCT TGACGATGAC GGGGTCGCGC CTGCGGTCCT GATCAAGCAG
TCAAGCATCG CCAGGGCCAA GGGCAAAACG CCGGTCGGTG GCCTGGGCGA CCGGGTGCTC
GCGAAGATTT TCCCCTCTAA GGAGCGCGGG GGCCCTGCCT ATACCGCGCG TATCATCAAG
GTGCTCGACA AGCGAAAAGA TGCGGTGCTC GGCGTTTTCC GTGCGACGCC GGGTGGCGGC
GGCCGGCTGA TGCCCATCGA CAAGCGCGGC GAGGAACTGC TCATCGATCC GGAGTTTACG
GGCGACGCCA AGGAAGGCGA TCTCGTCGAG GCGCATCTTT CGCGCATCGG TCGCTACGGC
CTGCCCCGCG CCCAGGTGCA GAACGTCATC GGCTCGGTAG CGTCCGAAAA AGCAATCTCG
ATGATCGCGA TCCACGCGCA TGGAATCCCT CACGTCTTTC CGGAGCGGGT TTTGCAGGAG
GCGGACGCAG CACAGCCCGC AACCATGTCG CATCGCGAGG ACTGGCGCTC CCTTCCGCTC
ATCACCATCG ACCCGGCCGA TGCCAAGGAT CACGACGACG CTGTCTATGC GGAGCCCGAC
CCGTCGCCGG ACAATCCCGG CGGCGTCATC GTCACAGTCG CGATCGCCGA CGTCTCCTGG
TACGTCAGGG CAAGGTCGGC ACTCGATCTC GAGGCGTTGA AACGCGGGAA CTCCGTCTAT
TTCCCGGATC GGGTCGTGCC AATGCTCCCC GAACGTATCT CAAACGACCT CTGCTCCCTG
AAGGAGGACG TCGACCGACC GGCGCTTGCG GTCCGGATGC GCTTTTCAAA GGAAGGCCGC
AAGGCCGGTC ATACCTTCCA CCGCATCATG ATGCGAAGCG CGGCCAAGCT CTCCTACCAG
CAGGCGCAGA CCGCGATTGA CGGTGCGCCG GACGAAAAGA CCGGGCCCAT TCTGGAAACG
ATCCTCAAGC CGCTGTGGGA AGCCTATCGC ATTCTCACGC GCGGGCGGGA GCGGCGCCAG
CCGCTCGAAC TCGACGTGCC GGAACGCAAG ATCATCCTGA AGCCGGACGG AACGGTCGAT
CGTGTGTTCG TGCCGGACCG CCTTGACGCG CACAAGCTCA TCGAAGAGAT GATGATCCAG
GCGAATGTGG CCGCGGCCGA GACGCTGGAA CAGAAACGCC AGGTTCTGAT CTACCGAGTC
CACGATCAAC CGTCGCTCGC CAAGCAGGAG AGCCTGCGTG AATTCCTGGC CACGCTCGAT
ATCTCGCTCG CCAAGGGCGG CAACATGCGG GCGAACCACT TCAACGGCAT TCTCGCCAAG
GCGGACGGAA AGCCCTTCGA GACGATTGTC AACCAGATGG TGCTGCGCTC GCAAAGCCAG
GCGATCTACA GCCCGGAAAA TATCGGCCAT TTCGGCTTGA ACCTGCTGCG CTATGCGCAC
TTCACCTCGC CGATCCGGCG TTATGCCGAC CTGATCGTGC ATCGCGCGCT CGTCTCCTCG
CTCGGGCTCG GCGAAGGGGG CATAACGCCC GAAGAAGAAG GCACCCTCGA CGATATCGCC
GCCGAAATTT CGACCTTTGA ACGGCGCGCA ATGGCCGCCG AGCGCGATAC CACCGATCGG
CTGATCGCTC ATCATCTGAA TGGCCGCGTC GGCGAGGAGT TCGAAGGACG TGTTTCCGGC
GTCACAAAGG CGGGACTTTT TGTCACCCTC CCCTCCTATG GCGCCGACGG GTTCATCCCT
ATATCTACGC TCGGACGCGA CTATTTCATC TATGATGAAG CGCACCAGGC CCTCTCCGGC
GAGAAAACGG GACTGGGCTA CCGCCTCGGG GACCCGGTGC AGGTCAAACT TGTCGAAGCG
GTGCCGCTGG CCGGCGCACT CCGTTTCGAG ATGCTGAGCG AGGGGCGAAA AATGCCGACG
GCAATGCGCT CGTTCCACAA GTCGGGCCGG CGCGATCGAA CTGGTGCGCG CAAACGGCCC
GGGACACGAG CGCCTCGCGG CAGGCAATGA
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| Protein sequence | MTRIPRDPTD TPAKGAGKKN GRAARTAPAG EKETIVQGAV PSREVLMRFI AENPQHASKR
DIAKAFGLKG EARVELKTLL RSLEADGLVE KKRKSLIRPG GLPPVTVLDI TIRDIDGDLI
GRPAEWLDDD GVAPAVLIKQ SSIARAKGKT PVGGLGDRVL AKIFPSKERG GPAYTARIIK
VLDKRKDAVL GVFRATPGGG GRLMPIDKRG EELLIDPEFT GDAKEGDLVE AHLSRIGRYG
LPRAQVQNVI GSVASEKAIS MIAIHAHGIP HVFPERVLQE ADAAQPATMS HREDWRSLPL
ITIDPADAKD HDDAVYAEPD PSPDNPGGVI VTVAIADVSW YVRARSALDL EALKRGNSVY
FPDRVVPMLP ERISNDLCSL KEDVDRPALA VRMRFSKEGR KAGHTFHRIM MRSAAKLSYQ
QAQTAIDGAP DEKTGPILET ILKPLWEAYR ILTRGRERRQ PLELDVPERK IILKPDGTVD
RVFVPDRLDA HKLIEEMMIQ ANVAAAETLE QKRQVLIYRV HDQPSLAKQE SLREFLATLD
ISLAKGGNMR ANHFNGILAK ADGKPFETIV NQMVLRSQSQ AIYSPENIGH FGLNLLRYAH
FTSPIRRYAD LIVHRALVSS LGLGEGGITP EEEGTLDDIA AEISTFERRA MAAERDTTDR
LIAHHLNGRV GEEFEGRVSG VTKAGLFVTL PSYGADGFIP ISTLGRDYFI YDEAHQALSG
EKTGLGYRLG DPVQVKLVEA VPLAGALRFE MLSEGRKMPT AMRSFHKSGR RDRTGARKRP
GTRAPRGRQ
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