| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0921 |
|---|
| Symbol | dnaE |
|---|
| ID | 5321762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 993789 |
|---|
| End bp | 997286 |
|---|
| Gene Length | 3498 bp |
|---|
| Protein Length | 1165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640789861 |
|---|
| Product | DNA polymerase III subunit alpha |
|---|
| Protein accession | YP_001326611 |
|---|
| Protein GI | 150396144 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.148077 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGGCA ACCAGGGTAT CGGACAGGTC GCAGGGGCTG TGGCGGATCC GCAGTTCGTC
CACCTGCGCG TGCATTCCGC CTATTCCTTG CTGGAAGGCG CCTTGCCCTT GAAGAAGATC
ATCGGCAAGG CGATCGCCGA CGATCAGCCG GCGATCGGTA TCGCCGACAC CAATAACCTC
TTCGCGGCGC TCGAATTCTC GCAGAAGGCC GCCGGGGACG GACTGCAACC GATCATCGGT
TGTCAGCTCT CGATCGACAT GGAGGATGAG GCCGAAGGCG AGCGGCGCGG CCATGCGCAT
CAGTTCGTCA AACTTCCGTC GCTTGTGCTG ATCGCAGCAA CCGATGACGG TTATGCCCGC
CTCGTGGAGC TGGTTAGCCG CGCCTACCTC GAAGGCGAGG GGCACCATCA GGTGCGAATA
AGCCGCTCCT GGCTTTCGGC GGGCGGCACA TCCGGTCTCA TTGCGCTTAC CGGGGCAGGT
ACCGGGCCGA TCGATATGGC GGTGAAGGCG GGTTCGCCGG CCCTGGCCGA GGCGCGGTTG
AAGACGCTGA TCGAACTTTT CGGCGATCGG CTCTATGTCG AGTTGCAGAG GCATGGGAAT
TACGACCGCA GTCACGAAAA CCGCATGATC GATCTTGCCT ATCGGCTCGA CGTTCCGCTC
GTTGCCACCA ATGAGGCGTT TTTCCCGTCG CCGGCGGACT ACGATGCCCA TGATGCGCTG
ATTGCCGTCG CCCATAATGC CATGGTCTCC GACGACAGCC GTTTTCGTCT GACGCCGGAC
CATTATCTGA AAAGCCGCAA GGAGATGGCG GCGCTTTTCG CAGACCTGCC GGAGGCGCTG
GAGAATACGA TCGAGATCGC TCGACGCTGC TCCTTCATGC TGAAGACCCG CAGCCCGATC
CTACCGCGCT TTACCGGCGC TTCGGGTGAT CCGGAGCAGG CGGAACGCGC CGAGGTGGCC
GAGCTGCGCC GTCAGGCGGA GGAGGGATTG GAGGGGCGCC TCGCCAAGCT CGGCATGGCC
CCCGGCTACA AGGAAGAGGA CTACCGGGAG CGGCTGGCCT TCGAACTCGG CGTCATCGAG
CGGATGAAGT TTCCGGGTTA CTTCCTCATC GTTGCCGACT TCATCAAATG GGCCAAGCAG
CATGACATCC CGGTCGGGCC GGGGCGCGGC TCCGGCGCCG GCTCACTGGT CGCCTATGCA
CTGACGATTA CCGACGTCGA TCCGATGCGC TTCTCGCTGC TGTTCGAGCG CTTCCTCAAT
CCCGAGCGCG TGTCGATGCC GGACTTCGAT ATCGATTTCT GCCAGGATCG GCGTGAGGAG
GTCATCCGCT ACGTACAGCA GAAATATGGA CGCGAGCAGG TAGCGCAGAT CATCACCTTC
GGATCGCTGC AGGCGCGCGC AGCACTTCGT GACGTCGGTC GCGTCCTGGA AATGCCCTAC
GGCCAGGTCG ACAAGATCTG TAAGCTGGTG CCGAACAATC CCGCAAATCC GACACCGCTT
TCCAAGGCCA TAGAGGAGGA GCCGCGGCTG CAGGAAGAGG CGGAGAAGGA GCCGGTCGTC
GGCCGGCTTC TCGACATTGC GCAGAAGATC GAAGGACTTT ACCGCCACGC CTCCACACAT
GCGGCCGGTA TCGTCATCGG CGACCGCCCG CTCTCGCAGC TTGTGCCGAT GTATCGCGAT
CCGCGCTCCG ACATGCCGGT GACCCAGTTC AACATGAAAT GGGTCGAGCA GGCAGGCCTC
GTGAAGTTCG ACTTCCTGGG CCTGAAGACG CTGACGGTGC TGAAGACGGC GGTCGACTTC
GTCGCCAAGC GCGGCATCCA TATCGACCTT GCAAGCATTC CCCTCGACGA CCCGAAGACA
TATGAGACCC TCTCGCGCGG CGAGACGGTC GGCGTGTTCC AGGTGGAAAG TGCCGGCATG
CGCAAGGCGC TTATCGGCAT GCGCCCGGAC TGCATCGAGG ACATCATCGC GCTTGTGGCG
CTCTATCGTC CGGGGCCGAT GGAGAACATC CCTATCTACA ACGCCCGCAA GCACGGCGAA
GAAGAGATCG AATCGATCCA TCCGAAGATC GATTACCTGC TCAAGGAGAC ACAGGGCGTC
ATCGTCTATC AGGAGCAGGT GATGCAGATC GCCCAGGTGC TCTCGGGTTA CTCGCTCGGC
GAGGCAGACC TTCTGCGCCG TGCCATGGGC AAGAAGATCA AGGAGGAGAT GGACAAGCAG
CGTGCCCGCT TCGTCGATGG CGCAGTCAGG AACGGCGTTT CCAAGCCGCA GGCCGATCTG
ATCTTCGACC TTCTCGCCAA ATTCGCCAAT TACGGGTTCA ACAAATCGCA CGCGGCCGCC
TACGCCATCG TTTCCTATCA GACCGCCTAT ATGAAGGCAC ACTATCCGGT CGAGTTCCTC
GCAGCCTCGA TGACGCTCGA CATGTCGAAC ACCGAGAAGA TCAACGATTT CCGCCAGGAC
GCGATGCGCC TCGGAATACA GGTGATCGCG CCATCCGTGC AGACCTCGCA CCGTCACTTC
GAAACCGGCG AAAAGCGCAT CTATTACTCG CTTGCCGCCC TCAAGGGCGT CGGCGAGTCG
GCCGTCGACC ACATCGTCGC CGTGCGTGAA GACCGGCCTT TCGCAAGTCT CGAGGATTTC
TGCCTGAGGA TCGACCCGAA GCTCTTGAAC CGCCGTGTCT TCGAAAGCCT GATCGCTGCC
GGTGCTTTCG ACTGCTTCGG CTACGACCGG GCGGAACTCG TCGGCGGGCT CGATCGTATC
CTCGGTTTCG CGCAGCGTGC CCAGGAGAAC AAGGTGAGCG GCCAGAGCGA CATGTTCGGC
GCGGGTGCCG CTACCGGGCC CGAGAAGATC GCGTTGCCGC CCTATACCCC TTGGCTCGCC
TCGGAAAAGC TGCACCGCGA GTTCCAGGTG CTGGGCTTCT ATCTCTCCGC TCATCCGCTC
GACACTTACA ACAGTCTTCT GGCGAAGATG CGCGTGCAGA CATTCGCGGA TTTTTCGGCC
GCCGTAAAAA AGGGAGCGAC GGCGGGCCGC CTCGCAGGGA CGGTGACGTC GAAGCAGGAG
CGCAAAACGC GCACCGGTAA CAAGATGGGG ATCGTCGCCT TCTCGGACGC CTCCGGCCAG
TTCGAAGCAG TCCTTTTCTC CGAAATGCTG AACCAGTATC GCGATCTCTT GGAGGCCGGC
AAATCGCTGG TGATGACCGT CGACGCCGAA GAGCGGCCGG AGGGCATCGG CCTTCGCATT
CGCACACTGC GTTCCCTCGA GGAGGAATCG CTGCAGATGC AGAAGGCGCT GCGCGTCTAT
GTGCGCGACT GCGGACCGTT GCGCTCCATC GCGTCGCATC TCAACGCCAG AGGAGACGGC
CTGGTCTCCT TCATCGTCAT CAAGGATAAC GGGCAGCGGG AAATCGAAGT CGAACTCAGC
GAGAAATACC GGATATCACC CGAGATTGCG GCCGCCCTTC GCTCCGCACC CGGTGTCGTG
GACGTCGAAC TGGTTTAA
|
|---|
| Protein sequence | MTGNQGIGQV AGAVADPQFV HLRVHSAYSL LEGALPLKKI IGKAIADDQP AIGIADTNNL
FAALEFSQKA AGDGLQPIIG CQLSIDMEDE AEGERRGHAH QFVKLPSLVL IAATDDGYAR
LVELVSRAYL EGEGHHQVRI SRSWLSAGGT SGLIALTGAG TGPIDMAVKA GSPALAEARL
KTLIELFGDR LYVELQRHGN YDRSHENRMI DLAYRLDVPL VATNEAFFPS PADYDAHDAL
IAVAHNAMVS DDSRFRLTPD HYLKSRKEMA ALFADLPEAL ENTIEIARRC SFMLKTRSPI
LPRFTGASGD PEQAERAEVA ELRRQAEEGL EGRLAKLGMA PGYKEEDYRE RLAFELGVIE
RMKFPGYFLI VADFIKWAKQ HDIPVGPGRG SGAGSLVAYA LTITDVDPMR FSLLFERFLN
PERVSMPDFD IDFCQDRREE VIRYVQQKYG REQVAQIITF GSLQARAALR DVGRVLEMPY
GQVDKICKLV PNNPANPTPL SKAIEEEPRL QEEAEKEPVV GRLLDIAQKI EGLYRHASTH
AAGIVIGDRP LSQLVPMYRD PRSDMPVTQF NMKWVEQAGL VKFDFLGLKT LTVLKTAVDF
VAKRGIHIDL ASIPLDDPKT YETLSRGETV GVFQVESAGM RKALIGMRPD CIEDIIALVA
LYRPGPMENI PIYNARKHGE EEIESIHPKI DYLLKETQGV IVYQEQVMQI AQVLSGYSLG
EADLLRRAMG KKIKEEMDKQ RARFVDGAVR NGVSKPQADL IFDLLAKFAN YGFNKSHAAA
YAIVSYQTAY MKAHYPVEFL AASMTLDMSN TEKINDFRQD AMRLGIQVIA PSVQTSHRHF
ETGEKRIYYS LAALKGVGES AVDHIVAVRE DRPFASLEDF CLRIDPKLLN RRVFESLIAA
GAFDCFGYDR AELVGGLDRI LGFAQRAQEN KVSGQSDMFG AGAATGPEKI ALPPYTPWLA
SEKLHREFQV LGFYLSAHPL DTYNSLLAKM RVQTFADFSA AVKKGATAGR LAGTVTSKQE
RKTRTGNKMG IVAFSDASGQ FEAVLFSEML NQYRDLLEAG KSLVMTVDAE ERPEGIGLRI
RTLRSLEEES LQMQKALRVY VRDCGPLRSI ASHLNARGDG LVSFIVIKDN GQREIEVELS
EKYRISPEIA AALRSAPGVV DVELV
|
|---|
| |