Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0885 |
Symbol | |
ID | 5321723 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 949610 |
End bp | 951976 |
Gene Length | 2367 bp |
Protein Length | 788 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640789822 |
Product | hypothetical protein |
Protein accession | YP_001326575 |
Protein GI | 150396108 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.854858 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGGAGG CGACGCAGAC CTTCGACGCT GCGGGAGAAC TCATCAAGCA GGTTCAGTCG AATGACGACG GGTCCAGGCA GACCGATACG TTCGATGTCG CCAAAAAGCA GAGCTGGGCG CAGCAGACGG ATGTCAACGA CAAAGCGGGC GCCCTCACCC AGCGTTCCTA CCTGAACGAC GACAAGACGC GCGTCACCAC ATTCTACGAT GTCGCGAAAG CGAAACCCTG GTCGAGCGCC GTGCAATATT TCGACGCTGC GGGCAAGATG ACGAAGCAGG TTCAGACGAA TGACGACGGG TCCAAACAGA CCGATACGTT CGATGTCGCC AAAAAGCAAA GCTGGGCGCA GCAGACGGAC CTCAACGACA AAGCCGGGGC GTTGACGCAA CGCTCCTATC TCAACGACGA CAAAACGCGG ACGACCACGC TTTACGACCC TGCCAAGGCC AAATCCTGGT CCACCGTCAC CCAATATTTC GACGCTGCCG GCAAACTGAG CAAGCAGGAG CAGGTCAACG ACAACGGCAC GAAAGTGACG GACTGGTTCG ATCTGACCGA CGCGCAGACC TGGGACCGGC AGACCTATTT CTATGACAAG GCCGGTGTGC GGACCCAGCG CTCGTGGGTC TATGACGACA AGACGAAAAC CAACATCTAC TACGATACGA CCAAGACCAA GGGATATTCC AGCCTCACTC AATATCTCGA CGTTGCGGGC AAGCTGACCC GGCAAGATGA AGTGAAGGAC GACGGCACCA GGCGAATCGA CTGGTATGAC GTTCCGAAAG CGCAAACCTG GACGCAGCAG ACGGACCTGT TCGACAAGGC CGGGGCCCGC ACCCAGCGCT CCTTCCTGTA CGACGACGGT TCGAAGTCCA ACACCTTCTA CGACGTTGCC AAGAGGCAGG CATATTCGAG CCTTACGGAC TATCTCGACA AAGCAGGCAA GCTGACGAAA CGGCACCAGA CGCTGGACAA CGGCACGAAA CAGACGGACT GGTTCGACAT CGCCAAGACG CAGGCGTGGA CGCAGCAGAC CTATTCCTAT GATGCCGCCG GAGCGACTAC GAAAAAGACG TGGCTGAACG ATAACGGCAC CAAAAACATC ATCTTCTACG ATGTCGCCAA GGCAAAAACC TATTCCAGCC TCACCCAATA CCTCGACGCA GCGGGCAAGC TGACGAAGCA GGTGCAGATC AATGACAACG GCACCAAGCA GACGGACTGG TACGATCTCG CCGACACGAA GGCTTGGTGG CAGCAGACAG ATTGGAACGA TGCCTCCGGC GCGCTGACGC AGCGTTCGTA TCTGGACGAT AGCAAGACGC GGGTGACGAC GAAATACGAT CCGGGAAAGA CGCAGAAATG GACGACTATC GTTCAGAATT TCGATGCCGC CGGCAAGATG ACGACGCAGG TCCAATCGAA CGACGATGGG TCGAAGGAAA CGACGACATA CGACGTGGCG AATGCTGAGA AGTGGTCGCA GTTGAGCGAT GTTACTGACA CAGCAGGAAA ACTCGTGGAG CGCTCACAGC TGAACGATGA CAAGTCCCGC ACTATCATCA CAGACGATCC ATCCGGCGCA CACCGAACCA CAAAGCATTT CAATGCGGCT GGGCAACTCG TAGAGTCAAG CGATCTAAGT GGAGGTGTTT TAAAGACGAC CTACTATGAC TTTGATAACT CGAAATCGTG GGCACATTGG ACTCACGGGT TGATGATCCC CCGACCGCTC GCCCCATTGA CATTTCAATC CACGACTTGG GACAACGGAA AGGTCACCAG CGGCAAACCA CCCGTCCTCC TCGACCTCAA CGGCGACGAT CACATCGACC TCCGCCCCTT CAATCCATTG GCCACGAACG GCCCTGCCTT CGACTGGGAT GGCGACGGCA CACGCGACGC GACCGCCTGG TTCGGACCGG AAGACGGCAT TCTCGCGATC GACCTTGCAG CCAACGGCGC GTCTGGTTCG GACGGCCTGA TCGACCAAGA ACGGGAACTC GCCTTCGCCT CCTGGGCCGA AGGCGGCGGA GTGGCTTCCG ACATGGAGGG CTTGAGGCTG GTCTTCGATA CCAACCGCGA CAATGCCCTC GACGCGCAGG ATGCGCGCTG GAACGAATTC CGGGTCTGGC AGGATCACAA TCAGAACGGC GTCACCGATA CCGGCGAGCT CATGACCATG TCGGAAGCGG GCATCCGGCT CGTCAACCTG CTGCCATCCA CCGACGGAGC AAAGGCCTTC GACGACGGCT CTGTCATCAC CGGCACGAGC TCGATGACGA TGACGGATGG CACGACGAGG CTCGTCGCCG ACACCACTCT GGCATTCCGC CCGTCCAGCC TCAACCAGGT CGCCTGA
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Protein sequence | MEEATQTFDA AGELIKQVQS NDDGSRQTDT FDVAKKQSWA QQTDVNDKAG ALTQRSYLND DKTRVTTFYD VAKAKPWSSA VQYFDAAGKM TKQVQTNDDG SKQTDTFDVA KKQSWAQQTD LNDKAGALTQ RSYLNDDKTR TTTLYDPAKA KSWSTVTQYF DAAGKLSKQE QVNDNGTKVT DWFDLTDAQT WDRQTYFYDK AGVRTQRSWV YDDKTKTNIY YDTTKTKGYS SLTQYLDVAG KLTRQDEVKD DGTRRIDWYD VPKAQTWTQQ TDLFDKAGAR TQRSFLYDDG SKSNTFYDVA KRQAYSSLTD YLDKAGKLTK RHQTLDNGTK QTDWFDIAKT QAWTQQTYSY DAAGATTKKT WLNDNGTKNI IFYDVAKAKT YSSLTQYLDA AGKLTKQVQI NDNGTKQTDW YDLADTKAWW QQTDWNDASG ALTQRSYLDD SKTRVTTKYD PGKTQKWTTI VQNFDAAGKM TTQVQSNDDG SKETTTYDVA NAEKWSQLSD VTDTAGKLVE RSQLNDDKSR TIITDDPSGA HRTTKHFNAA GQLVESSDLS GGVLKTTYYD FDNSKSWAHW THGLMIPRPL APLTFQSTTW DNGKVTSGKP PVLLDLNGDD HIDLRPFNPL ATNGPAFDWD GDGTRDATAW FGPEDGILAI DLAANGASGS DGLIDQEREL AFASWAEGGG VASDMEGLRL VFDTNRDNAL DAQDARWNEF RVWQDHNQNG VTDTGELMTM SEAGIRLVNL LPSTDGAKAF DDGSVITGTS SMTMTDGTTR LVADTTLAFR PSSLNQVA
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