Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0784 |
Symbol | |
ID | 5321621 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 842231 |
End bp | 842869 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640789721 |
Product | porin |
Protein accession | YP_001326475 |
Protein GI | 150396008 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3637] Opacity protein and related surface antigens |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.275504 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.0786165 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGTATGC TCACCACCAC TCTCATGGCC TCGGCCATGG CCCTCGTTGC CTTCCAGGCC GCCCACGCCG CTGACGTGGT CGACGAAATT CCGGCTGCTC CGGCTGCCGA ATATACCGAA CCGGCAGTTC GGAACTGGTC GGGCGCCTAT GTCGGGGGCA CCATCGACTG GCACCATGGC GAGGCCGATG CGACCGGCAA CAACAAATCG GTCGGAACTG GCGGCGGCCT CTATGGCGGC TACAACGTTC AGGATGGCCA AATGGTTTAT GGCGGTGAGG CCGACATCAA CTACACCGGC AACGACTCGC ATTCGAGCGG CCGTCGAGTC CAGCAGGGGC TCAACGGCTC GGTTCGCGCC CGCGTCGGTG TCGATGTGAA TCCGGTCCTC GTCTACGGCA CGGCCGGCGT CGCCCTCGGC AACGCCGAGC TCAAGACGCC TGCGGGCTCC GACGACAAGA CGCTGGTCGG CTGGACGGCC GGCGTCGGCG CCGAGACCTT CGTCACCGAC AACATCACGG CGCGCGCCGA ATACCGTTAC ACGGATTACG GTTCGAAGGA CTTCCGCACC GGCGGCACGA CGATCTCGTC CGGCTATGAC GAGCACGCCG TCAAGCTCGG TATGGGCGTC AAGTTCTGA
|
Protein sequence | MRMLTTTLMA SAMALVAFQA AHAADVVDEI PAAPAAEYTE PAVRNWSGAY VGGTIDWHHG EADATGNNKS VGTGGGLYGG YNVQDGQMVY GGEADINYTG NDSHSSGRRV QQGLNGSVRA RVGVDVNPVL VYGTAGVALG NAELKTPAGS DDKTLVGWTA GVGAETFVTD NITARAEYRY TDYGSKDFRT GGTTISSGYD EHAVKLGMGV KF
|
| |