Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0770 |
Symbol | |
ID | 5321607 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 827883 |
End bp | 829772 |
Gene Length | 1890 bp |
Protein Length | 629 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640789707 |
Product | ABC transporter related |
Protein accession | YP_001326461 |
Protein GI | 150395994 |
COG category | [R] General function prediction only |
COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0943746 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCAGA TATCCGGTCT TTCCGCCCGC ATCGCGGGCC GCCTGCTCAT CGATAATGCT TCCGTGACGC TTCCGGCGGG CACGAAAGCC GGTCTCGTCG GCCGCAACGG CGCCGGCAAG TCGACGCTCT TCCGGATCAT CACCGGCGAG CTCGCGGCCG AAGCAGGAAG CGTTTCCTTG CCGAAGAACG CACGGATCGG ACAGGTTGCG CAGGAAGCGC CGGGGACGGA AGAGCCTCTG ATCGAGATCG TACTCAAGGC CGATAAGGAA CGCACGGCGC TCATCTCCGA ATCGGAGACG GCGACCGATC CGCACCGGAT CGCCGAAATC CAGACGCGGC TCGCCGACAT TGGCGCGCAT TCGGCGGAAG CGCGTGCGGC GAGCATCCTC GCCGGCCTGG GCTTCGACCA CGAGGCGCAG AAGCGCCCTG CTTCCTCCTT TTCCGGTGGC TGGCGAATGC GCGTCGCGCT CGCCGCGGTC CTCTTCTCCG AGCCCGACCT GCTACTCCTC GACGAGCCGA CCAACTATCT CGACCTCGAA GGTACGCTGT GGCTGGAGGA CTATATCCGC CGCTATCCGC ACACCGTCAT CATCATCAGC CATGATCGGG ACCTGCTGAA CACAGCGGTG AACGCGATCG TTCACCTCGA CCAGAAGAAG CTCACCTTCT ACCGTGGCTC CTACGACCAG TTCGAGCGGC AGAAGGGGGA AGCGGACGAA CTTCAGATGA AGGCGAAGGC CAAGAACGAA GCGGCTCGCA AGCATCTGCA GAGCTTCATA GATCGCTTTA AGGCGAAGGC GTCCAAGGCG CGGCAGGCGC AGAGCCGCAT CAAGGCGCTC GAGCGGATGG GCACCGTTGC CGCCGTCATC GAGGATCATG TGCAGGGCTT CACCTTTCCG GATCCAGAAA AACAGGTGGC CTCGCCGATT ATCGCCATTC AGGGCGGCGC AGTCGGGTAC GAACCCGGCA ATCCCATCCT GAAGAGGCTC AATCTGCGCA TCGATGCGGA CGACCGGATC GCTTTGCTCG GTTCGAACGG CAACGGCAAA TCGACCTTTG CGAAGTTCAT CGCCGGACGC CTCAATGCGG AAGCCGGCGA GGTGCGGATC GCTCCGGGGC TGAAGGTGGG ATTCTTCGCC CAGCATCAGC TCGACGATCT CGTGCCGACG CGGAGCGCCG TTGAGCACGT TCGCCGCCGC ATGCCTGAAG CGCCGGAAGC GAAGGTGCGC TCCCGGGTGG CGCAGATGGG ACTTGCGACC GAGAAGATGG ACACCGCGGC AAAGGACCTC TCCGGGGGAG AAAAGGCGCG ACTGCTCATG GGCCTTGCCG CCTTCGAGGC GCCAAACCTC CTCATCCTGG ATGAGCCCAC CAACCATCTG GACATCGACA GCCGTAACGC ATTGATCGCG GCACTCAACG ATTTTTCGGG TGCGGTCATT CTCATATCGC ATGACCGTCA CCTCATCGAG GCGACAGCCG ACCGGCTATG GCTGGTGCGG GACGGAACCG TCGCGAATTA TGACGGCGAT CTGGAGGACT ATCGCGGCCT GATCGTGGGC GGTCCGAAGC TCAAGGATGA GAAGCCGAGA ATGAACGGAT CGGACGAGGC ACTCTCCAAG GCGGACCAGC GCAAGGTCAA TGCCGACAAG CGAGCTTCGC TGGCACCGCT CAGGAAAAAG ATCAACGACA TCGAGTCCTT GACGGCTAAG CTGGAGAAAC TGATTCAGGT ACTTGATGCC GAGCTTGCAG ATCCAGTCCT CTACGAGAAG GCTCCCTCAA AGGCCGCGCA ACGCGCCAAG GAACGGGCAG ACGCCGCCGA ACGGCTTGCG GCCGCGGAAG AACAGTGGCT GGAGCTGTCG GCGGAATACG AGCAGGCGAT GGCGGGATAG
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Protein sequence | MIQISGLSAR IAGRLLIDNA SVTLPAGTKA GLVGRNGAGK STLFRIITGE LAAEAGSVSL PKNARIGQVA QEAPGTEEPL IEIVLKADKE RTALISESET ATDPHRIAEI QTRLADIGAH SAEARAASIL AGLGFDHEAQ KRPASSFSGG WRMRVALAAV LFSEPDLLLL DEPTNYLDLE GTLWLEDYIR RYPHTVIIIS HDRDLLNTAV NAIVHLDQKK LTFYRGSYDQ FERQKGEADE LQMKAKAKNE AARKHLQSFI DRFKAKASKA RQAQSRIKAL ERMGTVAAVI EDHVQGFTFP DPEKQVASPI IAIQGGAVGY EPGNPILKRL NLRIDADDRI ALLGSNGNGK STFAKFIAGR LNAEAGEVRI APGLKVGFFA QHQLDDLVPT RSAVEHVRRR MPEAPEAKVR SRVAQMGLAT EKMDTAAKDL SGGEKARLLM GLAAFEAPNL LILDEPTNHL DIDSRNALIA ALNDFSGAVI LISHDRHLIE ATADRLWLVR DGTVANYDGD LEDYRGLIVG GPKLKDEKPR MNGSDEALSK ADQRKVNADK RASLAPLRKK INDIESLTAK LEKLIQVLDA ELADPVLYEK APSKAAQRAK ERADAAERLA AAEEQWLELS AEYEQAMAG
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