Gene Smed_0626 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0626 
Symbol 
ID5321462 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp671421 
End bp673622 
Gene Length2202 bp 
Protein Length733 aa 
Translation table11 
GC content62% 
IMG OID640789562 
Product1A family penicillin-binding protein 
Protein accessionYP_001326317 
Protein GI150395850 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.10684 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAGGAAC CGAGGAAAGA GGACAACCGG CCGAAACGGC GACATATCTT TCTTCGGATC 
GATTCCTGGA TCGATTCGAC CGTGTGGAGT GCGGGATTCC GCCTCGCGGA ATGGTGGGAA
GATACCACCA TCTTCTTCCG ACGGTTTCGC GTACGCGGCT GGAAGAAAGC CCTCTTCGAA
GTGCTTGGCG AAGGCATGAC ATTGGGTGCG GCAGGCTCCG TACTGATGCT GGCGCTCGCC
CTCCCCGCCT TCGAGGAGAC CACCGGCAAC TGGCGCGCGC AAAGCGATTT CGCGGTCACC
TTTCTGGACC GTTACGGCAA CGAGATCGGC CACCGGGGTA TTATCCATGA GGATTCCGTC
CCGATCGACG AGCTTCCGGA TCACCTTATA AAGGCGGTGC TCGCCACCGA AGACAGGCGC
TTCTTCGACC ATTGGGGGAT AGACTTTCTA GGGCTCGCAC GCGCGATGAC CGAGAACGCT
CGCGCGGGTG GCGTTGTTCA AGGCGGTTCG ACACTTACGC AGCAGTTGGC AAAGAACCTG
TTCCTCTCGA ACGAACGGAC GATCGAGCGC AAGATCAAAG AGGCTTTCCT GGCCGTCTGG
CTCGAATCCA ACCTTTCGAA GAAGGAAATC CTCCGCCTCT ATCTGGACCG TGCCTATATG
GGCGGCGGCA CCTTCGGCGC CGCGGCGGCA GCCCAATTCT ATTTCGGCAA GGCAATTACC
GACGTCAATC TTGCCGAGTC CGCGATGCTC GCAGGGCTCT TCAAGGCGCC GGCACGCTAT
GCTCCGCATG TGAACCTGCC GGCGGCGCGT GCCCGCGCCA ACGAAGTTCT GAGCAATCTC
GTCCAAGGCG GCCTGATGAC GGAGGGACAG GTGATCGCCG CTCGCCTGAC TCCGGCGTCC
GTCGTTGATC GTGCGCAGGT CAAGGCACCG GATTTCTTCC TCGATTGGGC TTTCGAAGAG
GTCCAGCGCA TCGCCGCCCC CTTCGCGCAA CATTCCCTGA TCGTGCGCAC GACGATCGAC
ATGGGGCTGC AGCAAGCAGC CGAGGAAGCG GTCGAGTCGG GCCTCAGGCA ATATGGCGAG
ACCTACAAGG TCAAGCAGGG TGCGCTGGTA ATGGTCGAAC ATGGCGGCGC GGTAAGGGCG
ATGGTCGGCG GCCGTGACTA CGGCGAAAGC CAGTTCAACC GTGCGACGCG CGCGCTTCGC
CAGCCGGGCT CGTCTTTCAA GGTCTATACC TATGCTGCCG CGATGGAAAA GGGCATGAAG
CCCGAAACCG TCGTCGTCGA CGCGCCGATC ACCTGGCGTG GCTGGTCGCC TCAGAACTAT
GCCCGCAAAT ATGCCGGCCG GGTGACGCTG ATGAACGCGC TCGCCAGATC GATCAACACT
GTTCCGGTCC GCCTCGCAAA GGACAAGCTT GGGACCGAGA TCATTGCCGA GACCGCCAAG
CGAATGGGCA TAGAAACCCC CATCCGTACC GACAAGACCA TGCCGCTCGG CACTTCCGAA
GTCACCGTGC TCGACCAGGC GACGGCCTAT GCGGTCTTTC CGGCCGGCGG GTTCCAATCG
CGGCGCCACG GCATCAGCCA GATTCTCAAC TATGACGGCG ACATTCTCTA CGATTTCGGG
CGCGACGCGA CGCCGGCACG CAGGGTGCTG AGCGAAGAGG CGGCCTCATC GATGAACCGC
ATGCTGACGC AGATTCCGGT TATCGGCACG GCGCGACGCG CAGCCCTCGA CAACGGCATC
GTCACGGGCG GCAAGACAGG CACGACACAG GCTTATCGCG ATGCGTGGTT CGTCGGTTTC
ACGGGCGACT ACACGACTGC CGTCTGGTTC GGCAATGACG ACTATACCTC CACCGACGAA
ATGACAGGCG GCTCTCTCCC CGCGATGACC TTCAAGCGAC TGATGGATTA TGCCGAGCAC
GGGATCGAGC ATCGTGCGAT ACCCGGAATC GAAGCGCCAT CCGAGCCGGC GAAACAACAG
CCGGCCGAAA CCGCCAAAAA GGACGACAAC GCCCTGCCGC CGCTCGTGCG CCCGCGATCG
CTTTCCGCCG ACGTAACCCG GCTTCTGAAG AAAATCGGCG GCACTTTCGA AAAGGCGCAG
CCGTTGAAGG CACGCGAACG GCCCGGCGGC AAGGTGGCCG TACTCGAAAC GCCGAGTCAA
GGGTCTCACA TCCGGCCCTT GCGCAACACG ACAAACAATT GA
 
Protein sequence
MQEPRKEDNR PKRRHIFLRI DSWIDSTVWS AGFRLAEWWE DTTIFFRRFR VRGWKKALFE 
VLGEGMTLGA AGSVLMLALA LPAFEETTGN WRAQSDFAVT FLDRYGNEIG HRGIIHEDSV
PIDELPDHLI KAVLATEDRR FFDHWGIDFL GLARAMTENA RAGGVVQGGS TLTQQLAKNL
FLSNERTIER KIKEAFLAVW LESNLSKKEI LRLYLDRAYM GGGTFGAAAA AQFYFGKAIT
DVNLAESAML AGLFKAPARY APHVNLPAAR ARANEVLSNL VQGGLMTEGQ VIAARLTPAS
VVDRAQVKAP DFFLDWAFEE VQRIAAPFAQ HSLIVRTTID MGLQQAAEEA VESGLRQYGE
TYKVKQGALV MVEHGGAVRA MVGGRDYGES QFNRATRALR QPGSSFKVYT YAAAMEKGMK
PETVVVDAPI TWRGWSPQNY ARKYAGRVTL MNALARSINT VPVRLAKDKL GTEIIAETAK
RMGIETPIRT DKTMPLGTSE VTVLDQATAY AVFPAGGFQS RRHGISQILN YDGDILYDFG
RDATPARRVL SEEAASSMNR MLTQIPVIGT ARRAALDNGI VTGGKTGTTQ AYRDAWFVGF
TGDYTTAVWF GNDDYTSTDE MTGGSLPAMT FKRLMDYAEH GIEHRAIPGI EAPSEPAKQQ
PAETAKKDDN ALPPLVRPRS LSADVTRLLK KIGGTFEKAQ PLKARERPGG KVAVLETPSQ
GSHIRPLRNT TNN