| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0617 |
|---|
| Symbol | |
|---|
| ID | 5321453 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 664192 |
|---|
| End bp | 665769 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640789553 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_001326308 |
|---|
| Protein GI | 150395841 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.862925 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGGCA AATGGTTATC CCTCGTGGAT GACGCGGCCG CACCTTGGCT GCCACGCAGC
GTTCTCGCCC CGGCAATCGT ACGTCATGAC TTCAGACGCC TGCGCACCGT CGCTGCCGTG
TCCTTGACCG CGCTGCCGAT CATCCCCCTC GCGCTGACGC TGGCACTGCC CGTATCCGCC
GCGCTGCCGG CGGGAGCGGC GCTTTGGGCG TCGGCCTCCC TGTTGGCCGC AGCGGCGGCT
ATTTCCGGCG GCCGTGCCGA GCCGATCGTC GCTGAGGTGG AAGTGGCGCC TGCGCCGGGC
CTGCCAGACC TCGATACAGC CTATGATCTG TTTGCGGGGT TGGTGACTGT CCACGATATC
AGGGGCCACG TCCGGTCAGT ACACGGCCGC GACGCCCGCG AATATCTGAA ACTGATGCGC
GATCCGCAGG GGCGCGGCTT CATCGAGCAG ATTCACGTTT CGGATCGTAT CGCTTTCCTG
CGAGCGATCG ATTCACTGCG CCTCGACAGC GAGCGCACGG CTGTGGACAT TCGTCTCGAA
CGGACGTCGG CGGATGGTCC CCAATTCGCT CATTTCTATT GCGAGATGAC GCCCCTTCGG
GACGCTGAAG GAAATCTCCT CGCGATTGTC GCCCAGTCGC GCGATGTCTC CGAAGGCGCG
CGTTTGCAGG CGGAGGCGGC AGCCAGGGCC GCGCACGCCG AGTCCGCAAA CGATGCCAAG
ACCCGGTTCC TTGCCGCGGT CAGCCACGAA TTGCGCACGC CGCTCAATGC CATTCTCGGT
TTTTCCGACG TTCTTGCCGG TGAATATTTC GGGAAACTCG AAAACGATCG CCAGCGCGAA
TATGTGTCGC TGATCCACCA GTCCGGCACG CATCTTCTCT CGGTCGTCAA CACGATGCTC
GACATGAGCA AGATCGAAGC GGGCCGCTAC GAGCTTCTCC GCGAACCTTT CCGCGTCGCC
GAGGCCATCG CCGCATGCGA GGCGATGCTG TCGCACCAGG CGCGCGAGAA GGGTGTGCGA
CTGGCGAGCC GGGTTACCCG TTCGGTTGGC GAAATCAATG CAGACCAGCG CGCCGTCCAG
CAAATTCTCA TCAATCTCGT TGGTAACGCG ATCAAGTTTA CCGACCGGGG TGGGCTTGTC
ACCGTCGATG CCGCCCGGGA AGGCGCCTTG CTGAAGCTTA CGGTCAGTGA TACCGGAATC
GGCATCGCCG CGGACAAGCT GAAGATGCTT GGCCAACCTT TTGTCCAGAT TCAGAATGAT
TATACCCGCC GCTACGAGGG AACGGGACTT GGGCTGTCTC TGGTGAAGGG ACTTGCCGAA
CTGCATGGCG GCGACGTTTC GATCCGTAGC GCCGAGGGTG AGGGCACCGA GGTCGTGGTC
TCCATTCCCT GCGATGTTTC GAGCATTGCC GGAGCGGAAT GCGCGCGCGT GCCTGTCACG
GTGGAGTTTC CGCCGCGGTT GACGCTGCGC GGCGACGGAA AAAGCGATGT TGGTGAGCCG
GCCGTGGTCG AGGCTCTCCG CAAAGGAGAA ATGGGTCGGG AAGGGGGACA TGGCACCGCG
CAAGCGAAAA CAGCCTGA
|
|---|
| Protein sequence | MAGKWLSLVD DAAAPWLPRS VLAPAIVRHD FRRLRTVAAV SLTALPIIPL ALTLALPVSA
ALPAGAALWA SASLLAAAAA ISGGRAEPIV AEVEVAPAPG LPDLDTAYDL FAGLVTVHDI
RGHVRSVHGR DAREYLKLMR DPQGRGFIEQ IHVSDRIAFL RAIDSLRLDS ERTAVDIRLE
RTSADGPQFA HFYCEMTPLR DAEGNLLAIV AQSRDVSEGA RLQAEAAARA AHAESANDAK
TRFLAAVSHE LRTPLNAILG FSDVLAGEYF GKLENDRQRE YVSLIHQSGT HLLSVVNTML
DMSKIEAGRY ELLREPFRVA EAIAACEAML SHQAREKGVR LASRVTRSVG EINADQRAVQ
QILINLVGNA IKFTDRGGLV TVDAAREGAL LKLTVSDTGI GIAADKLKML GQPFVQIQND
YTRRYEGTGL GLSLVKGLAE LHGGDVSIRS AEGEGTEVVV SIPCDVSSIA GAECARVPVT
VEFPPRLTLR GDGKSDVGEP AVVEALRKGE MGREGGHGTA QAKTA
|
|---|
| |