| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0576 |
|---|
| Symbol | |
|---|
| ID | 5321412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 626381 |
|---|
| End bp | 626857 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640789512 |
|---|
| Product | transcriptional regulator, TrmB |
|---|
| Protein accession | YP_001326267 |
|---|
| Protein GI | 150395800 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1846] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0950259 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGA AAGCGGCAAA ATTCGACTCA GGTTCCGATG AGGCGCTGGC GCTTGGTCAG
CAGCTCTGCT TTGCGGTCTA TTCGGCGGCG CATGCCTTCA ATCGCGCCTA CAAGCCCTTG
CTCGACCGTT TTGGGCTGAC CTATCCCCAA TATCTCGTGC TTTTGGCGCT CTGGCAGCAG
GACCGCATGA CGGTGAAGCG AATTGGCGAA GAGCTGGGTC TCGATTCAGG CACGCTTTCA
CCGCTGCTCA AGCGGCTGGA GGCGGCCGGC TATGTCCGCC GTGCGCGCGA TGCGGCAGAC
GAGCGGCAGG TCATCGTCAG CCTGACGCAA GGCGGACGCG ATCTGAAGGC CGAAGCATTC
GGTATTCTAC GCGATATCGG CAATGCCTCA GGCTGCAGCC TTGAGGAAGT CCGGGAGATG
CGCGACGCAC TGCATCGGCT GACGCAGCGG CTCGCCGGCC GCCATCAAGA AAGCTGA
|
|---|
| Protein sequence | MTTKAAKFDS GSDEALALGQ QLCFAVYSAA HAFNRAYKPL LDRFGLTYPQ YLVLLALWQQ
DRMTVKRIGE ELGLDSGTLS PLLKRLEAAG YVRRARDAAD ERQVIVSLTQ GGRDLKAEAF
GILRDIGNAS GCSLEEVREM RDALHRLTQR LAGRHQES
|
|---|
| |