Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0519 |
Symbol | |
ID | 5321353 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 562711 |
End bp | 564399 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640789453 |
Product | cytochrome c oxidase subunit I type |
Protein accession | YP_001326210 |
Protein GI | 150395743 |
COG category | [C] Energy production and conversion |
COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGGAA CAGCCGTTCA TCACGATCAA CGCCATGATC ATTCCGATCA TGGCCACGCG GAACACGCGC ACAAGCCGCT GACATTTTTT CAGCGCTGGT TCCTGTCGAC CAACCACAAG GACATCGGAA CGCTCTACCT GATCTTCGCG ATCATCGCCG GTATCATCGG CGGAACGCTG TCGGTCTTCA TGCGCGCCGA ACTGCAGGAG CCGGGCATCC AGATCTTCCA CGGTCTGGCG CAGATGGTCT ATGGTTTCGA GGGTGATGCT GCCATCGACG GCGGCAAGCA CATGTTCAAC GTCTTCACGA CAGCGCACGC CCTGATCATG ATCTTCTTCA TGGTCATGCC GGCCTTGATC GGTGGTTTCG CCAACTGGAT GGTGCCGATC ATGATCGGCG CACCGGACAT GGCGTTCCCG CGCATGAACA ACATTTCCTT CTGGCTCATC GTGCCGGCAT TCCTGCTCGT GCTGCTTTCG ATGTTCGTCG AAGGTCCTGC AGGCGCCTAT GGTGCGGGCG GCGGCTGGAC GATCTATCCG CCATTCTCGA CATCCGGCAT GCCCGGGCCG GCAATGGATC TTGCAATTCT CGGCCTGCAT ATTGCCGGTG CCTCGTCGAT CCTCGGTGCG ATCAACTTCA TCACCACCAT CCTCAACATG CGCGCTCCGG GCATGACGCT GCACAAGATG CCGCTCTTCG CCTGGTCGGT TCTGATCACC GCCTTCCTGC TCCTGCTCTC GCTGCCGGTT CTCGCAGGTG CGATCACGAT GCTGCTGACG GACCGCAACT TCGGCACAAC CTTCTTCTCG CCGGAAGGCG GCGGCGACCC GATCCTGTTC CAGCACCTGT TCTGGTTCTT CGGTCACCCG GAAGTGTACA TCTTGATCCT GCCGGGCTTC GGCATCGTCA GCCACATCAT CTCGACCTTC TCGCGCAAGC CGATCTTCGG CTATCTCGGG ATGGCCTACG CCATGGTCGC TATCGGCGCG GTCGGCTTCA TCGTGTGGGC GCACCACATG TACACGGTCG GCATGTCGCT CCAGACGCAG CGCTACTTCG TCTTCGCGAC GATGGTCATC GCGGTTCCGA CTGGTGTGAA GATCTTCTCC TGGATTGCGA CGATGTGGGG CGGCTCGATC CGCTTCTCCA CGCCGATGGT CTGGGCGATC GGCTTCATCT TCCTGTTCAC GGTCGGCGGC GTCACCGGTG TTCAGCTCGC CAATGCCGGC CTCGACCGCG CACTGCACGA CACCTATTAC GTGGTGGCGC ACTTCCATTA CGTGCTCTCG CTCGGCGCCG TTTTCGCGAT CTTTGCGGCC TGGTACTACT GGTTCCCCAA GATGACCGGC TACATGTATT CGGAGTTTCT CGGCAAGCTG CACTTCTGGG TGATGTTCGT CGGCGTGAAC CTCATCTTCT TCCCGCAGCA CTTCCTCGGC CTCGCGGGCA TGCCGCGCCG ATACATTGAT TATCCGGACG CCTTTGCAGG CTGGAATATG GTATCGTCCT ACGGCTCCTA CATCGCGGCC GTCGGCGTGC TGATCTTTCT CTACTGTGTC GCCGAAGCTT TCGCGAAGAA GCGCGTTGCA GGGGATAACC CCTGGGGTGA AGGCGCCAAC ACGCTGGAAT GGCAGCTGTC CTCGCCGCCG CCGTTCCACC AGTGGGAGCA GCTCCCGCGG ATCAAGTGA
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Protein sequence | MAGTAVHHDQ RHDHSDHGHA EHAHKPLTFF QRWFLSTNHK DIGTLYLIFA IIAGIIGGTL SVFMRAELQE PGIQIFHGLA QMVYGFEGDA AIDGGKHMFN VFTTAHALIM IFFMVMPALI GGFANWMVPI MIGAPDMAFP RMNNISFWLI VPAFLLVLLS MFVEGPAGAY GAGGGWTIYP PFSTSGMPGP AMDLAILGLH IAGASSILGA INFITTILNM RAPGMTLHKM PLFAWSVLIT AFLLLLSLPV LAGAITMLLT DRNFGTTFFS PEGGGDPILF QHLFWFFGHP EVYILILPGF GIVSHIISTF SRKPIFGYLG MAYAMVAIGA VGFIVWAHHM YTVGMSLQTQ RYFVFATMVI AVPTGVKIFS WIATMWGGSI RFSTPMVWAI GFIFLFTVGG VTGVQLANAG LDRALHDTYY VVAHFHYVLS LGAVFAIFAA WYYWFPKMTG YMYSEFLGKL HFWVMFVGVN LIFFPQHFLG LAGMPRRYID YPDAFAGWNM VSSYGSYIAA VGVLIFLYCV AEAFAKKRVA GDNPWGEGAN TLEWQLSSPP PFHQWEQLPR IK
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