| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0419 |
|---|
| Symbol | |
|---|
| ID | 5321253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 451719 |
|---|
| End bp | 452396 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640789354 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001326111 |
|---|
| Protein GI | 150395644 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3637] Opacity protein and related surface antigens |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.647021 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAT ATTTCTTAAG TGCGGCATTT CTTGCTGGAG CACTTTCACC TGTCGTGGCC
GCCGATCTTG CGCCGGTCGA GTCGCCGCCG GCCATATCCG CGCCGGCAGC GTTCGACTGG
AACGGCTTTT ATCTCGGCGG TAACGTAGGC GGCGGCCGTG CGGATGTGGA TTGGACGTAT
CAGCCTTTCG GCGAGACGGC CCATCACGAC GGTAAGGGAT TTCTCGGCGG CGTTCAGGCG
GGCTATAACT GGCAGATCGA CGGCTTCGTC ATCGGTGCAG AAGCGGACTT TCTGGGTTCC
AGCATCGATG GAGACACGCC CTGCCCTAAT CCGGCTTACT CATGCACGAG CGATACGAAA
TGGCTGTCCA CCGTCCGCGC CCGCGCAGGC TACAGCTTCG ATAACCTGCT TGTCTACGCG
ACTGGCGGAT TGGGAATAGG CCGCTTCGAG ATAAAAACGG ATGACGGAGC CGGTACAAGC
GGTAGCACCA TACGCAACGA CACCGGCTGG GTCGCCGGCG CTGGCGTCGA ATACGGCTTC
TCGCCGAACT GGTCGATCAA GGCCGAGTAT ATGCACCATG ATTTCGGCGA GCGAACCTAT
ACAGTCGATG GCGGCAATCC TGTCGATGCC GACTTCCGCT TCGATACGGG CAAGATTGGC
GTAAACTACC GCTTCTGA
|
|---|
| Protein sequence | MKRYFLSAAF LAGALSPVVA ADLAPVESPP AISAPAAFDW NGFYLGGNVG GGRADVDWTY
QPFGETAHHD GKGFLGGVQA GYNWQIDGFV IGAEADFLGS SIDGDTPCPN PAYSCTSDTK
WLSTVRARAG YSFDNLLVYA TGGLGIGRFE IKTDDGAGTS GSTIRNDTGW VAGAGVEYGF
SPNWSIKAEY MHHDFGERTY TVDGGNPVDA DFRFDTGKIG VNYRF
|
|---|
| |