Gene Smed_0393 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0393 
Symbol 
ID5321227 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp421682 
End bp422578 
Gene Length897 bp 
Protein Length298 aa 
Translation table11 
GC content63% 
IMG OID640789328 
ProductLysR family transcriptional regulator 
Protein accessionYP_001326085 
Protein GI150395618 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00156411 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.514567 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCATT TAGGCGATCT CGAGATTTTT GCGCGGGTCG TGTCGACCGG CAGCATGTCG 
GCCGCAGGAC GGGCGCTCGG CTTCTCCGCA GCCGTGATTT CGAAACGCAT CAAGCGGCTC
GAAGACAGGC TCGGCACGCG CCTGCTGCAG CGGACGACGC GGCAGATCTC GATGACAGAG
GCCGGCCAGG GTTTCTACGA CCGCGTTCTC GGCATCCTCG CCGGGCTCGA GGAAGCCGAG
GCCTACGCCT CGGGCCGTTC TTCCCAGGTT CGAGGAACGC TGCGCATCTC CGCGCCGACC
TCGTTCGGGC GTTTGCATAT CGCGCCTCAT CTGACCGGCT TCATGAAGGA CCACCCAGAC
CTGAAGCTGC ACATCGTGTT GACCGACGAT TTTACCGATA TCGTCGCAGA AGGATTTGAC
CTCGCGATCA GAATAGGCGA ACTCAGCGAC TCGAGCCTCG TCGCCCGCAG ACTCGCGCCG
GTGCGCCGGC TTCTCTGCGC GGCACCAAGC TATGTCGCCA GTCATGGGAC GCCCAAGGAC
ATCGGCGAAC TCGCGAGCCA CATCTGCCTC CCGGCGCACA ACAACGACAA CTGGAAGCTG
GAGGGGCCGG AGGGAAATCT GTCCTATCGT CCGGAAGGGC CTCTCGTCAC CAATTCGTCG
GAGATCATAC GCGAAGCGGT GATTGCCGGC GCCGGCATCG CGTTGCGTTC CACCTGGGAT
ATCGGCAGGG AACTCCGGGA TGGGCGCCTC GTTCAGGTGC TGCCGCAATG GGAAGGATCG
CACAGGCTGA CGCTTTCGGC CGTCTATCCG AGCCGGCAAT TCCTTCCGGC CAAGGTCCGG
ATGTTCATCG ATTACCTCGC CGCACTCTAC GGCCCTGTGC CCTATTGGGA GCAATAG
 
Protein sequence
MTHLGDLEIF ARVVSTGSMS AAGRALGFSA AVISKRIKRL EDRLGTRLLQ RTTRQISMTE 
AGQGFYDRVL GILAGLEEAE AYASGRSSQV RGTLRISAPT SFGRLHIAPH LTGFMKDHPD
LKLHIVLTDD FTDIVAEGFD LAIRIGELSD SSLVARRLAP VRRLLCAAPS YVASHGTPKD
IGELASHICL PAHNNDNWKL EGPEGNLSYR PEGPLVTNSS EIIREAVIAG AGIALRSTWD
IGRELRDGRL VQVLPQWEGS HRLTLSAVYP SRQFLPAKVR MFIDYLAALY GPVPYWEQ