| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0309 |
|---|
| Symbol | |
|---|
| ID | 5321141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 332417 |
|---|
| End bp | 333829 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640789244 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001326003 |
|---|
| Protein GI | 150395536 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3800] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGAGA ACAAGATCTT TGCCGGGCCG CGTGTCAGAC GAATTCGCAA CGGCCTTCAG
CTGACGCAGA CGGCTATGGC CGAGGCGCTT GGCATCTCTC CTTCCTATCT GAACCTGATC
GAGCGCAACC AGCGGCCGCT GACGGTACAG CTGCTTTTGA AGCTGGCCTC CGTTTACAGG
ATCGACCTCG AAGAACTTCA GGGTGAGGCG GGCAGCGGCC TTGCCGAGCT GCGCGAGGTC
TTCGCCGATC CGCTGCTTGC CGGCGAACTG CCGGGCGACC AGGAGCTGGT GGAAGTCGCC
GAAGCTGCGC CGAACGTTTC CGGGGGCATC GTCAAACTGC ACCGCGCCTA TCGCGAACAG
GCCGCGCGTC TGAGGGATCT CGCCGCTCTG CTGGCGGATC AGGGGCACAT GGCGGCACTT
GCCGACACAC GACTGCCGAT GGACGAAGTC CGAGAGGCCT TCGAGGCGCG TCCCAACCAC
TTCGGCCGAA TCGAGGAGGC GGCGGAGGCT CTGCACGAAA GCCTTTCGCC TGGCGACGAT
CTTTCAGGGT CAATGAAGGC GTGGCTCAGG AAAGAGCACG GGCTCGCAGT GCGAACGCTG
CCGGTGCATG TCATGCCCAC ATTGCGCCGC CGATTCGACC GCCATTCCAT GCGCCTCTTC
ATTTCCGAAC GCCTGTCTCC CTTCGACCAG CTGCGCGAGA TCGCGATCGA AGTGGCTTCG
ATCGCGATCC ACGAGGCGAT TGCCGCCGAG CTCGAGCAGT TCCGCTTCTC CACCGCGGAG
GCACGGCGCA TCGGCCGTTT CGAGCTCGCG CGCTATGCCG CTCACGCGCT GATGATGCCC
TATGCGGCGT TTCTTGCCGC GGCGCAGCGG GCGAAATACG ATGTCGGCGT ACTTGCGGCA
CGTTTCCAGG TCTCGTTCGA GCAGGCCGCA AACCGCTTGA CGATGCTGCA ACGGCCAGGG
TCCGGTGGGG TCCCGTTCTT TCTCATGGAG GTCGATAGCG CCGGCAACAG GCTGCGTCGC
GCGGGAGCGC AGGCCTTCCC CCATGCCCGC TTCGGTGGCG CCTGTCCCAA GCTCAATGTC
CAGGCAGCCT TCGCCGTGCC GGGTCAGCTT CTCGCCGAGC GCGTCCAGAT GCCCGAGGGC
GCCGAATTCC TCGTCATTGC CCGGACTGTC GACGGACCGC AGGCCGGCTT CCACGAGCGC
GTACGACGCA CGGCGATCCT CATAGGCTGC GAGGCTGCCT TCGCGAATGA AACGGTCTAT
GGAGCCGCCG CAGGCCTGCC TGCGATCGCA GTCGGCCCGG CTTGCCGCCT CTGCGAGCGG
CAGGGCTGTC TGGCGCGCGC CGAACCGCCG ATCACACGGC CGCTCGGCCT TGACGAAATG
GCAACGGGGT TGAGCGTCTT CGACTTTCAG TAA
|
|---|
| Protein sequence | MAENKIFAGP RVRRIRNGLQ LTQTAMAEAL GISPSYLNLI ERNQRPLTVQ LLLKLASVYR
IDLEELQGEA GSGLAELREV FADPLLAGEL PGDQELVEVA EAAPNVSGGI VKLHRAYREQ
AARLRDLAAL LADQGHMAAL ADTRLPMDEV REAFEARPNH FGRIEEAAEA LHESLSPGDD
LSGSMKAWLR KEHGLAVRTL PVHVMPTLRR RFDRHSMRLF ISERLSPFDQ LREIAIEVAS
IAIHEAIAAE LEQFRFSTAE ARRIGRFELA RYAAHALMMP YAAFLAAAQR AKYDVGVLAA
RFQVSFEQAA NRLTMLQRPG SGGVPFFLME VDSAGNRLRR AGAQAFPHAR FGGACPKLNV
QAAFAVPGQL LAERVQMPEG AEFLVIARTV DGPQAGFHER VRRTAILIGC EAAFANETVY
GAAAGLPAIA VGPACRLCER QGCLARAEPP ITRPLGLDEM ATGLSVFDFQ
|
|---|
| |