Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0160 |
Symbol | |
ID | 5320990 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 176103 |
End bp | 177473 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640789093 |
Product | MATE efflux family protein |
Protein accession | YP_001325854 |
Protein GI | 150395387 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.538946 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGACGG CGACACAAAG CCTCGAGCGC GACTCCGATA GTCCCGAAGC CGGGCCATTT ATCGTCACCA ACAGGCTGAT CTTCTCGATC GCCCTGCCGA TGACGCTCGG CTTCCTTACG ACGCCTCTTC TCGGTCTCGT CGACACGGCC GTCGTTGGCC GGCTCGGCCG GGCGGAGTTG CTCGCGGGCC TCGCGGTCGG CGCGGTGATC TTCGACCTCA TCTTTACCAC CTTCAACTTC CTTCGAGCCG CGACCACGGG CCTGGTCGCA CAGGCTCTTG GACGCGGCGA TCGACGCGAG CAGCAGGCGG TCTTCTGGCG TTCGCTTGTG ATTGCGCTCG TCACCGGCGC TGCCATCGTG CTTATATCTC CCTTTCTGCT TTCCGCCGGC CTCTGGCTCA TGGGGCCCGG TCCGGACGTC GCGGAGGTGA CGCGCACCTA TTTCCAATAT CGCATCCTCT CCGGCCCGGC CGCGCTCGCC AACTACGCCA TCCTCGGATT CGTGCTCGGG CGCGGCGAGG GCACTCTTGG CCTCATGCTG CAGACGCTGA TAAACGGCAC CAATATCGTG CTTTCGGTCC TGCTCGGCCT CGTTCTCGGC TGGGGTGTAG CCGGCGTCGC GATCGGGACC GTCGCCGGAG AGGTTATCGG CGCGCTTGCG GGTTTCGCGA TCGTCTATGG CCGCTTCGAC AGCAAGGACG CGCCAGGTTG GGCGATGATC CTTGCCGGCG ACCGCCTGAA GAAATTGTTC GGTCTCAATC GCGACATCAT GATCCGATCA TTCGCCCTTC TGGCGGCCTT CACGCTCGTG ACCCGGATCG GCACCTCCTT CGGTCCCGTG ACGCTTGCGG CGAACGCGGT GCTGATGACG ATCTTCCTTG TGGCGGGCTA TTATCTCGAT GGACTTGCCA CCGCCGCCGA GCAGTTGACA GGCCGATCCA TCGGCGCCGC TTATCGCCCC GCTTTCGACC GGGTTCTGCG GATGACTGCG CTCTGGTCGC TCGGTCTCGC CGCCCTGACG ACGCTCGCTC TGCTCGCCTT CGGCAATGCC GTGGTGAATA TGATGACCAC GGCGCCGGAT GTGCGCGCTC TTGCTTATGA ATACATGCCA TGGGCGGCGG TGACGGCGCT GACCGGTGCT CTTGCCTTCC TCATGGACGG CGTCTTCATC GGAGCCGGCT GGTCGCGCGA CATGCGCAAC ATGATGCTGG CTGCCTTCAT CGGATACGTC GCAGCGCTTG CCGTGCTCGT CCCTGCCTTC GGCAATCACG GCCTCTGGGC CGCGCTCAAC CTGTTCCTGC TCATGCGCGG CGTTTTCCTG CTGATAAGGA TCCCGCGCCG GGCAGCTCAG ACGTTCATGC CAGTCCAGTA A
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Protein sequence | MMTATQSLER DSDSPEAGPF IVTNRLIFSI ALPMTLGFLT TPLLGLVDTA VVGRLGRAEL LAGLAVGAVI FDLIFTTFNF LRAATTGLVA QALGRGDRRE QQAVFWRSLV IALVTGAAIV LISPFLLSAG LWLMGPGPDV AEVTRTYFQY RILSGPAALA NYAILGFVLG RGEGTLGLML QTLINGTNIV LSVLLGLVLG WGVAGVAIGT VAGEVIGALA GFAIVYGRFD SKDAPGWAMI LAGDRLKKLF GLNRDIMIRS FALLAAFTLV TRIGTSFGPV TLAANAVLMT IFLVAGYYLD GLATAAEQLT GRSIGAAYRP AFDRVLRMTA LWSLGLAALT TLALLAFGNA VVNMMTTAPD VRALAYEYMP WAAVTALTGA LAFLMDGVFI GAGWSRDMRN MMLAAFIGYV AALAVLVPAF GNHGLWAALN LFLLMRGVFL LIRIPRRAAQ TFMPVQ
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