| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0155 |
|---|
| Symbol | |
|---|
| ID | 5320985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 172895 |
|---|
| End bp | 173356 |
|---|
| Gene Length | 462 bp |
|---|
| Protein Length | 153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640789088 |
|---|
| Product | alkylhydroperoxidase |
|---|
| Protein accession | YP_001325849 |
|---|
| Protein GI | 150395382 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.804329 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCCAC GTTTGAATTT TGCGAAAGCC GCGCCGGAAG CCTACAAGGC CGTCGCCGCG
CTCGAAACCT ACGTCAAGGG TTCGGGAATC GAGCCTCGCC TGCTCCACCT GATCAAGCTG
CGCGCGTCGC AGATCAACGG CTGTGCCTAT TGCGTCGATA TGCATAGCAA GGAGGCCCGC
CACAGCGGCC TCAGCGAACA ATGGATCAAT CTCGTCTGTG TCTGGCGCGA ATCGCCGCAT
TTCGACGAGC GCGAACGAGC CGTCCTCGGC TGGACCGAGG CACTGACCAA TGTGGCTGAG
ACACGCGCGC CCGATCATGC CTATGAGGCG CTCAGGGCGC ATTTCGACGA AGAGGAGATG
ACCAAGATCA CCGTCGCGAT CGGCACCATC AACGTATGGA ACCGTCTGTG CGTCGGCTTC
CGCGCCTTGC CCCCGATCGA TGCGCCGGCC AAGGCGGCAT AA
|
|---|
| Protein sequence | MQPRLNFAKA APEAYKAVAA LETYVKGSGI EPRLLHLIKL RASQINGCAY CVDMHSKEAR
HSGLSEQWIN LVCVWRESPH FDERERAVLG WTEALTNVAE TRAPDHAYEA LRAHFDEEEM
TKITVAIGTI NVWNRLCVGF RALPPIDAPA KAA
|
|---|
| |