| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0101 |
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| Symbol | |
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| ID | 5320929 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 111629 |
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| End bp | 112858 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640789033 |
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| Product | ROK family protein |
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| Protein accession | YP_001325796 |
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| Protein GI | 150395329 |
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| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
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| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00205324 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTTGA CAGAAGGCCC TCATGCGGGG GTGAACCAGC CTGATGTGAT CGACCCGAGC
GGCGGGGCGA ACCAGACGCG CGTGCGCGCT TATAATGAAC GGCTCGTCAT GTCGCTGGTG
CGCCGTCACG GCAGTCTTTC CAAGGCCGAA ATCGCGCGCC GCTCCGGCCT TTCGGCGCAG
ACCGTATCGG TCATCATGCG ATCGCTCGAA GCCGACGGGC TGCTTGTCCG TGGTGCCCCG
GTACGCGGCC GCGTCGGTCA GCCATCCATC CCCATGCGGC TCAATCCGGA TGCGGTCTAT
TCGTTCGGGG TCAAGATCGG GCGGCGTAGC GCCGACCTGG TGCTGATGGA TTTCCTCGGC
ACCATCCGGC TGCACCTGCA TCAGATCCAC ACCTATCCGC TACCCGAGGA TATCGTCAAC
TTCATCGTCA ACGGCATCGA CAAGCTCGAG AGAGAGCTTG GCCCCGGCGA GCGCGGGCGC
ATCGTCGGCG TCGGCGTCGC CACGCCGTTC GAGTTGTGGA ACTGGGCGGA GGAAGTCGGC
GCACCGCGGA ACGAGATGGA CAGGTGGCGC GACTTCGATC TGCAGGCGGC GGTCTCCTCG
CGAATCTCAC ATCCCGTCTT TCTGCAGAAT GACGGGACCA GCGCCTGCGG TGCCGAACTC
GCCTTCGGCG TCGGCGCCAG CTATCCGGAC TTTGTCTATT TCTACATAGG CTCCTTCATC
GGCGGCGGTG TCGTCATCAA TTCCGCGCTT TTCTCCGGCC GAACCGGAAC CGCCGGTGCG
GTCGGCCCGC TGCCCGTTGC AGGCAAGGAC GGCAAGTCGA CGCAATTGCT GAAGATCGCC
TCGGTCTTCG TGCTGGAAAA ACTCCTGCGA GAACGCGGGA TGGACCCCCA GCCGCTCTGG
TACTCCGCCG ACGACTGGAT CGATTTCGGC GAACCGCTGG AGGTCTGGAT CCAGGATGCG
GGCGCGGCGC TTGCGCAGGC CGTCGTTTCC GCCGTCTCGA TCGTCGATTT TTCCGCGGTC
GTGATCGACG GCGGCTTCCC GCCTTGGGTT CGTGTGCGCC TTCTTGCGGC AACGCGCAAG
GCCCTCAATA CGCTCGACCT GCAGGGCGTC ACGCTTCCGG ACCTCGTGGA AGGCACCGTC
GGCAGCCACG CCCGTGCGAT CGGCGGTGCC AGCCTGCCGC TCTTTTCCCG CTATCTGCTG
GACACCAATG TCCTCTTCAA GGAGCTTTGA
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| Protein sequence | MSLTEGPHAG VNQPDVIDPS GGANQTRVRA YNERLVMSLV RRHGSLSKAE IARRSGLSAQ
TVSVIMRSLE ADGLLVRGAP VRGRVGQPSI PMRLNPDAVY SFGVKIGRRS ADLVLMDFLG
TIRLHLHQIH TYPLPEDIVN FIVNGIDKLE RELGPGERGR IVGVGVATPF ELWNWAEEVG
APRNEMDRWR DFDLQAAVSS RISHPVFLQN DGTSACGAEL AFGVGASYPD FVYFYIGSFI
GGGVVINSAL FSGRTGTAGA VGPLPVAGKD GKSTQLLKIA SVFVLEKLLR ERGMDPQPLW
YSADDWIDFG EPLEVWIQDA GAALAQAVVS AVSIVDFSAV VIDGGFPPWV RVRLLAATRK
ALNTLDLQGV TLPDLVEGTV GSHARAIGGA SLPLFSRYLL DTNVLFKEL
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