| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0086 |
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| Symbol | |
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| ID | 5320914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 95969 |
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| End bp | 97768 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640789018 |
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| Product | YadA domain-containing protein |
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| Protein accession | YP_001325781 |
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| Protein GI | 150395314 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport
[W] Extracellular structures |
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| COG ID | [COG5295] Autotransporter adhesin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGTAGTAG CGACTTGCAC ACGTTCTGTT GATCGCAGGC GAGATCGAGG TGTCTCTTCA
AGCTGGTTTC GGCTTGCGCT GGGGAGACGA CGGCTGATTG GGCCGGGTAC GGCCGTCTTG
CTGGCAGCTG CCGTGGTGAC AGGTTCCGCG CCGGCAGTCT CGGCCGCCAC GCTGACCTCG
ATCTTCGCGA CCGAGGCCAA CAGAACCGGC GAAAACGGCG CGACCGCCAA CTCTGCATGT
GATTCGGAGC TGAGATTTTG CTCCACTGCG ATCGGCACTG GTGCCGACGC AAGCGGTGTC
GCTTCAACCG CGCTTGCTTC CGAGGCCGTG GCATCCGGAA CGAAAGCAAT TGCGATCGGC
GGACGCTCGT CAGCGTCCGG GGAGAACAGC ATTGCTCTAG GCACGTCTGC GCAAGCCGCG
GGAAGTCAGG CCACCGCCGT CGGTCTGCAA TCGAATGCCG GTGGCGGCAA TTCGATCGCC
TTGGGCTTTG GGGCGCAGAC GAGGGCCGGG GATGCAACGG ATCCGGACGG CGCGACCTCA
GCCGTAGCGA TCGGATCCGG CGCGCAGGCC AATGGCGAAC AATCCCTGAG CTTCGGCTCA
TTAGCCGAGG CGACCGGTGA AGGAAGCGTC GCCATCGGTC CGCTCAGCAA AGTGTCGGCC
AAAAATGGCG TCGGCATCGG TAACGATAAC AAGGTTTCAG GCATCGACAG TGTCGGTATC
GGTACCGGCA ATTCGGTGAC AGGTGAAAAA AGCGTCGGCA TCGGATACGC CAATACCGTC
TCGGGCGATA ACAGTGGTGC AATAGGCGAC CCGACCACCA TTACGGGCAC CGGTTCCTAT
TCTCTCGGCA ACGACAACAC CATCGACGCC GACAACGCCG GCACGTTCGG CAACGACAAC
AAACTGGCGA ATACGGCCGA TGGCAGCCGC ATCGTAGGCA ACGGCAACGA CATAGATGTC
GGGGACGCTT TCGTGCTCGG CAATACGGCC GACGTCACGG TCGAGGGCGG CGTCGCGCTC
GGTACCAGCT CTGTTTCCGA CACCGGCGCG GTGGACGGCT ACGTGCCGTT TGGTGCATCG
GAAGCGGACA GAAACGCAAT CGCCGAAACG AAAAGCACGA GCGGCGCCGT GGCAGTGGGC
AATGATGCCC CCGGTGCCGA AATCTATCGC CAGATCACGG GGCTTGCCGC CGGTACGGCG
GATTCCGATG CCGTCAATGT CTCACAGCTC AAGGCCCTCG AAGGCGGCGT GAAAAATGCC
GTATCCTATG ACACCGACGC CGCCGGCCAG AAGCTCAACA CGATCACCTT GAAGGGTGGC
GACCCCAACC AGCCGGTTCT CGTGGCCAAT GTCGCCAAAG GCGTAAAGGA CACCGATGCC
GCCAATGTCG GTCAGGTCAA GGAAGGGATC GCCGAAACCA AGCACTACAC GGACGAAAAG
ACCAATTGGG CGATAGATCA GTCGGCCAGC TATACGGATA CCGTCACGGA CACCAAGGTC
CGCGCGGCGA ACCACTACAC GGATCAGAAA TTCTCGCAGC TGTCGGGCGA GCTCGGGGAA
GTTCGCGGGG AAGCCCGCCA GGCCGCCGCA ATCGGCCTCG CGGCATCCTC CCTGCGTTTC
GACGACCGGC CTGGCAAGCT AAGCGTAGCG CTTGGAGGCG GGTTCTGGAG GAGCGAAGCA
GCACTCGCAT TCGGCGCCGG CTACACGAGT GAGAACGGCC GCATGCGGGC AAATCTCACC
GGAACGGCGG CCGGGGGGCA CGTCGGCGTT GGCGCGGGGC TCAGCATCAC TTTGAACTGA
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| Protein sequence | MVVATCTRSV DRRRDRGVSS SWFRLALGRR RLIGPGTAVL LAAAVVTGSA PAVSAATLTS
IFATEANRTG ENGATANSAC DSELRFCSTA IGTGADASGV ASTALASEAV ASGTKAIAIG
GRSSASGENS IALGTSAQAA GSQATAVGLQ SNAGGGNSIA LGFGAQTRAG DATDPDGATS
AVAIGSGAQA NGEQSLSFGS LAEATGEGSV AIGPLSKVSA KNGVGIGNDN KVSGIDSVGI
GTGNSVTGEK SVGIGYANTV SGDNSGAIGD PTTITGTGSY SLGNDNTIDA DNAGTFGNDN
KLANTADGSR IVGNGNDIDV GDAFVLGNTA DVTVEGGVAL GTSSVSDTGA VDGYVPFGAS
EADRNAIAET KSTSGAVAVG NDAPGAEIYR QITGLAAGTA DSDAVNVSQL KALEGGVKNA
VSYDTDAAGQ KLNTITLKGG DPNQPVLVAN VAKGVKDTDA ANVGQVKEGI AETKHYTDEK
TNWAIDQSAS YTDTVTDTKV RAANHYTDQK FSQLSGELGE VRGEARQAAA IGLAASSLRF
DDRPGKLSVA LGGGFWRSEA ALAFGAGYTS ENGRMRANLT GTAAGGHVGV GAGLSITLN
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