| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0079 |
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| Symbol | |
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| ID | 5320906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 86577 |
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| End bp | 88370 |
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| Gene Length | 1794 bp |
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| Protein Length | 597 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640789010 |
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| Product | putative inner membrane protein translocase component YidC |
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| Protein accession | YP_001325774 |
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| Protein GI | 150395307 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGAAA ACAACCGCAA TTATTTCGTG GCGATCGCCC TTTCCGTGCT GATCCTCATC
GCCTGGCAGT TCTTCTATGT CAGCCCGAAG ATGGAGAAGG ACCGCATTGC CGCGGAAAAA
GCCCAGCAGG CCCAGTCGCA ACCGGGTACG CAGCAGGCGG CACCCGGACA GGCTGCACCG
GGACAAGCCT TGCCCGGCGG GGCAATCCCG AGCGCCGCCG AAAGCCGCGA TCAGGCGATC
GGCAAGTCGG CCCGCGTAGC GATCGACACG CCGGCGCTTT CCGGCTCCAT CAACCTGACC
GGCGCACGCT TCGACGACCT GAAGCTCAAG GGCTACCGCG AAACGGTGGA TCCGAAGAGC
CCTGTCATCA CGCTCTTCAG CCCGGCGGAG ACCGCCGACG GCTATTTCAC CGAAATCGGG
TATATCGGGT CGGATGCGAC CGGGTCGGTT CCGGGCCCTC AAACGGTTTG GATGCTTTCG
GGCGGCGACA AGCTCACGCC CTCGACGCCG GTGACGCTGA GCTACACGAA CGACAAGGGC
ATTACCTTTA CCCGGACCAT CTCGGTTGAC GACCGCTACA TGTTCGAAGT GGTCGACAGC
ATCAAGAACG ACGCCGCCGC CGCGGTTTCG CTTTCCTCCT ATGGCCGCGT CACGCGCTTC
AACAAGCCGA GCACACCGAG CATCTACGTG CTCCACGAAG GCTTTGTCGG AGTCGCGGGA
GAGCATGGCC TCCAGGAAGT CGGCTACTCC GACGTCGAGG ACGAGGAGCC GGTCGAACCG
GGCAAATCGA CCGGCGGGTG GCTGGGCATC ACCGACAAAT ACTGGGCGGC GACCATCGTC
CCTCCGCAGG ACACACCCTT CGACATCCGC TTCTCGCATT TTGCCGACGG CCGCCCGCGC
TACCAGAGCG ACTATAAGAG CGATGCCGTC ACGGTTGCGC CTGGTCAATC GGCAGAGGTG
AAGAACCTCA TCTTCGCCGG CGCCAAGGAA GTTCCGGTCG TCGACAATTA CGAATTGACC
TATTCCATCC CCAATTTCGA CAAGCTGATC GACTGGGGCT GGTTCTACTT CATCACCAAG
CCGATGTTCA AAATGATGGA TTTCTTCTTC CGTCTCTTCG GCAATTTCGG CATCGCCATC
CTGATCACCA CCATTGTGGT GAAGCTCATC TTCTTCCCGC TCGCCAACAA GCAGTACGCT
TCGATGGCGA ACATGAAGAA GGTTCAGCCG AAGATGGAGG AACTGAAGAA GAAGTTCGGC
GACGACCGCA TGGGTCTGCA GCAGGCGATG ATGCAGCTCT ACAAGGAAGA AAAGATCAAC
CCTCTGGCGG GCTGCTGGCC TATCCTCATC CAGATCCCCG TTTTCTTCGC GCTATACAAG
GTGATCTACG TCACCATCGA GATGCGGCAT GCACCGTTCT TCGGCTGGAT CCAGGATCTC
TCCGCCCCGG ATCCGACGAC GATTATCAAT CTTTTCGGTC TTCTGCCATT CGAGGGACCG
GCATTCCTGC ACCTCGGCAT TTGGCCGATC GTCATGGGCG TCACCATGTT CCTGCAGATG
CGCATGAACC CGACCCCGCC GGACCCGACC CAGGCGATGC TGTTCACCTG GATGCCGGTG
GTCTTTACCT TCATGCTGGC GTCGTTCCCC GCCGGTCTGG TGATCTACTG GGCGTGGAAC
AACACGCTCT CGATCCTGCA GCAGGGCATC ATTATGAAGC GTCAGGGCGT GAAGGTCGAA
CTCTTCGACA ATCTGAAGTC GCTGTTCTCG AAGAAACCGA AACCGGCGGA ATAG
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| Protein sequence | MMENNRNYFV AIALSVLILI AWQFFYVSPK MEKDRIAAEK AQQAQSQPGT QQAAPGQAAP
GQALPGGAIP SAAESRDQAI GKSARVAIDT PALSGSINLT GARFDDLKLK GYRETVDPKS
PVITLFSPAE TADGYFTEIG YIGSDATGSV PGPQTVWMLS GGDKLTPSTP VTLSYTNDKG
ITFTRTISVD DRYMFEVVDS IKNDAAAAVS LSSYGRVTRF NKPSTPSIYV LHEGFVGVAG
EHGLQEVGYS DVEDEEPVEP GKSTGGWLGI TDKYWAATIV PPQDTPFDIR FSHFADGRPR
YQSDYKSDAV TVAPGQSAEV KNLIFAGAKE VPVVDNYELT YSIPNFDKLI DWGWFYFITK
PMFKMMDFFF RLFGNFGIAI LITTIVVKLI FFPLANKQYA SMANMKKVQP KMEELKKKFG
DDRMGLQQAM MQLYKEEKIN PLAGCWPILI QIPVFFALYK VIYVTIEMRH APFFGWIQDL
SAPDPTTIIN LFGLLPFEGP AFLHLGIWPI VMGVTMFLQM RMNPTPPDPT QAMLFTWMPV
VFTFMLASFP AGLVIYWAWN NTLSILQQGI IMKRQGVKVE LFDNLKSLFS KKPKPAE
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