| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0054 |
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| Symbol | def |
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| ID | 5320881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 57379 |
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| End bp | 57903 |
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| Gene Length | 525 bp |
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| Protein Length | 174 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640788985 |
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| Product | peptide deformylase |
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| Protein accession | YP_001325749 |
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| Protein GI | 150395282 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.847323 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.000416121 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGACGATCA AGCCGCTCAT CATTCTTCCC GATCCGGTTC TGCGCCAGGT GTCGACACCC
GTGGAAACCG TTGACGCCGA TATTCGCCGG CTCGCCGACG ATATGCTGGA AACCATGTAC
GATGCGCCCG GTATCGGGCT CGCCGCGATA CAGATCGGCG TGCCGAAGCG CCTCCTGGTG
CTCGACGTGA CGAAGGAGGG AGAGGAGAAG CAGCCGCTCG TCTTCATCAA TCCGAAGGTC
GTTCGCTCTT CCGAGGAGCG TTCGGTCTAT GAGGAGGGCT GCCTTTCGAT CCCCGACTAC
TACGCCGAGG TCGAACGGCC GGCCGCGATC ACTGTCGAGT ACGTCGACCG TGAAGGCAAG
GAACAGGCAG TTGAGGCCGA TGGCTTGCTC GCTACCTGCC TGCAGCACGA GATCGACCAT
CTGAACGGTG TCCTGTTCAT CGATTACATT TCAAAGCTCA AGCGCGATAT GGTGATTCGC
AAGTTCACAA AGGCGGCGAA AACGCGCGGC GCAAAGGCGA TCTGA
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| Protein sequence | MTIKPLIILP DPVLRQVSTP VETVDADIRR LADDMLETMY DAPGIGLAAI QIGVPKRLLV
LDVTKEGEEK QPLVFINPKV VRSSEERSVY EEGCLSIPDY YAEVERPAAI TVEYVDREGK
EQAVEADGLL ATCLQHEIDH LNGVLFIDYI SKLKRDMVIR KFTKAAKTRG AKAI
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