| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0030 |
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| Symbol | |
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| ID | 5320857 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 28334 |
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| End bp | 31081 |
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| Gene Length | 2748 bp |
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| Protein Length | 915 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640788961 |
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| Product | DNA mismatch repair protein MutS |
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| Protein accession | YP_001325725 |
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| Protein GI | 150395258 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
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| TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0000355609 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATTTCC TGATGGATGC ATCGAACCGA ACGGGCGACG TCCTTTCCGT GTCCGATCTC
GCGAGCGAAG AGAGCCGCTC CACCGCCACG CCGATGATGG AACAGTTCAT CGAGATCAAG
GCGAACAACC GGGATTCGCT CCTGTTTTAC CGCATGGGTG ATTTCTACGA GCTGTTTTTC
CAGGATGCGG TCGAGGCCTC GCGCGCACTC GGTATCACGC TGACGAAACG CGGACAGCAC
ATGGGGCAGG AAATCCCCAT GTGCGGCGTG CCGGTGCATG CGGCTGACGA TTACCTGCAG
AAGCTGATTG CGCTCGGCTA TCGCGTCGCG GTCTGCGAAC AGGTGGAGGA CCCTGCCGAG
GCGAAGAAGC GCGGCGGCAA ATCGGTCGTG CGCCGCGATG TCGTCCGCCT CGTAACGCCG
GGAACGATCA CCGAGGACAA GCTGCTCTCG CCCTCGGAAT CAAACTATCT CATGGCGCTC
GCGCGCATCA GGAGCGGCTC GGAGCCCGCT TATGCGCTTG CCTGGATCGA TATTTCGACG
GGAATCTTCC GCCTCGCCGA GACCGCGGAG AGCCGGCTTC TTGCCGACAT ATTGCGCATC
GAACCACGCG AACTGATCCT GCCGGATACC GTCTTCCACG ATCCGGATCT CAGGCCCGTT
TTCGACGTGC TCGGGCGGGT CGCGGTACCG CAGCCGGCCA TCCTTTTCGA CAGTGCGACG
GCGGAAGGCC GGATATCACG CTACTACGGC GTCGGGACGC TCGACGGCTT CGGCAGTTTC
TCGCGCGCGG AGCTCGCCGC CGCATCGGCG GCAGTCTCCT ATGTCGAAAA GACCCAGCTC
CAGGAGCGCC CGGCGCTCGG CATACCGGAA AGGGAAAGCG CCGCCTCGAC CCTCTTCATC
GATCCGGCAA CCCGTGCCAA TCTGGAGCTC GCCAAGACGC TGTCGGGCTC GCGCGACGGC
AGCCTGCTCA AGTCGCTCGA CCGTACGGTG ACGAGCGGTG GCGCCCGGCT GTTGGCCGAA
CGGCTGATGT CACCCCTGAC CGACCCGGAA CGGATCAATC GGCGGCTCGA TTCCATCGAA
ATGCTGGCCG ACCAGCCGCG CTTCACGGCC GACGCTCGCG ATGCGCTTCG CAGGGCGCCG
GACATGCCGC GCGCCCTGTC GCGGCTCGCG CTTGGCCGCG GCGGCCCTCG CGATCTCGGT
GCCATACAGG CGGGCATGCG GGCCGCGGTC GCGATCGCGG CGCTTCTCTC GGGTGCCGAG
CTTTCGGTGG AACTGGCTGA AGCGCGTGAC GCGATCGCGG GCTTGCCGCG GGACCTCCTC
GCGCGCCTCG ACGCGACCCT TGCGGAGGAA TTGCCGCTTT TGAAGCGCGA TGGCGGTTTC
GTCCGCGAAG GTGCTAACGC CGAACTCGAC GAGATGCGCG CTCTGCGCGA CCAGTCGCGC
CGCGTGGTTG CCGGTCTTCA GCTCCAATAT TGCGAAGAGA CCGGAATCAA GTCGCTGAAA
ATCAAGCATA ACAACGTGCT CGGCTACTTC ATCGAGGTGA CCGCCGGAAA TGCCGGCGCC
ATGATCGATA CGGATGCGGG CCGTGCCCGC TTCATCCACC GCCAGACCAT GGCGAACGCC
ATGCGCTTCA CCACGACCGA GTTGGCGGAG CTCGAAACCA AGATCGCCAA TGCCGCGGAC
CGCGTTCTGG CGATCGAACT CGAGACTTTC GAGGTCATGA CGCGCGAGGT GGTCGCCGAG
GCCGAAGCGA TCAAAGCGGC GGCGCTGGCG CTGGCGACGA TCGACGTCTC GGCCGGACTG
GCGGTGCTTG CGGAGGAGCA GAACTATACG CGCCCCGCCG TCGACCGCTC GCGCATGTTC
GCGATCGACG GGGGCCGCCA CCCCGTGGTG GAGCAGGCGT TGAGACGCCA GGCCGCCAAT
CCCTTCGTCG CGAATGGCTG CGACCTTTCC CCGCCCGGTG GGGAAGAGGG CGGCGCGATC
TGGCTCCTCA CCGGCCCCAA CATGGGCGGC AAGTCGACTT TCCTGCGGCA GAACGCGCTG
ATCGCGATCA TGGCGCAGAT GGGGTCCTTC GTGCCTGCAT CCGCCGCGCA TATCGGCGTC
GTCGACCGCC TCTTCTCACG CGTCGGGGCA TCGGACGACC TCGCGCGTGG CCGTTCGACC
TTCATGGTCG AAATGGTCGA GACGGCTGCG ATTCTCAACC AGGCGACCGA CCGCTCGCTG
GTGATCCTCG ACGAGATCGG CCGCGGCACG GCGACCTTCG ACGGCCTGTC GATCGCCTGG
GCGGCTGTCG AGCATCTGCA CGAGGTCAAT CGTTGCCGCG GGCTGTTCGC GACCCATTTC
CACGAATTGA CGGTGCTTTC CGAAAAACTC GGCCGGCTTT CCAACGCGAC CATGCGCGTC
AAGGAGTGGG ACGGCGACGT CATATTCCTG CATGAAGTGG GGCCAGGGGC AGCCGACCGC
TCCTACGGAA TCCAGGTCGC CCGGCTTGCC GGCTTGCCGG CGTCGGTCGT CGCCCGCGCG
CGGGACGTTC TCGCCAAGCT TGAAGACGCG GACCGCAAAA ATCCGGCGAG CCAGCTGATC
GACGACCTGC CGCTGTTCCA GGTCGCGGTC CGGCGCGAGG AGGCGGCGAG GGCACCGGGA
CTTTCCAGGG CGGAGGAGGC CCTGAAGGCG CTCAACCCGG ACGACATGAC GCCGCGCGAG
GCGCTCGACG CGCTGTACGC GCTCAAGAAG CAGCTTTCCA ACCGCTGA
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| Protein sequence | MNFLMDASNR TGDVLSVSDL ASEESRSTAT PMMEQFIEIK ANNRDSLLFY RMGDFYELFF
QDAVEASRAL GITLTKRGQH MGQEIPMCGV PVHAADDYLQ KLIALGYRVA VCEQVEDPAE
AKKRGGKSVV RRDVVRLVTP GTITEDKLLS PSESNYLMAL ARIRSGSEPA YALAWIDIST
GIFRLAETAE SRLLADILRI EPRELILPDT VFHDPDLRPV FDVLGRVAVP QPAILFDSAT
AEGRISRYYG VGTLDGFGSF SRAELAAASA AVSYVEKTQL QERPALGIPE RESAASTLFI
DPATRANLEL AKTLSGSRDG SLLKSLDRTV TSGGARLLAE RLMSPLTDPE RINRRLDSIE
MLADQPRFTA DARDALRRAP DMPRALSRLA LGRGGPRDLG AIQAGMRAAV AIAALLSGAE
LSVELAEARD AIAGLPRDLL ARLDATLAEE LPLLKRDGGF VREGANAELD EMRALRDQSR
RVVAGLQLQY CEETGIKSLK IKHNNVLGYF IEVTAGNAGA MIDTDAGRAR FIHRQTMANA
MRFTTTELAE LETKIANAAD RVLAIELETF EVMTREVVAE AEAIKAAALA LATIDVSAGL
AVLAEEQNYT RPAVDRSRMF AIDGGRHPVV EQALRRQAAN PFVANGCDLS PPGGEEGGAI
WLLTGPNMGG KSTFLRQNAL IAIMAQMGSF VPASAAHIGV VDRLFSRVGA SDDLARGRST
FMVEMVETAA ILNQATDRSL VILDEIGRGT ATFDGLSIAW AAVEHLHEVN RCRGLFATHF
HELTVLSEKL GRLSNATMRV KEWDGDVIFL HEVGPGAADR SYGIQVARLA GLPASVVARA
RDVLAKLEDA DRKNPASQLI DDLPLFQVAV RREEAARAPG LSRAEEALKA LNPDDMTPRE
ALDALYALKK QLSNR
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