Gene Smed_0010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0010 
Symbolrph 
ID5320837 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp8747 
End bp9466 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content62% 
IMG OID640788941 
Productribonuclease PH 
Protein accessionYP_001325705 
Protein GI150395238 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0689] RNase PH 
TIGRFAM ID[TIGR01966] ribonuclease PH 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.000167054 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGGCCAT CCGGCAGAAA AACCGACCAA ATGCGCAAGG TCTCGTTCGA GCGCAATTTC 
TCCAAGCATG CGGAAGGATC CTGCCTGGTA CGTTTCGGCG ATACGCACGT GCTCTGCACT
GCAAGCCTGG AGGACAAAGT TCCGGGATGG CTCCGCAACG GCGGCAAAGG CTGGGTCACT
GCGGAATACG GCATGCTGCC GCGTGCGACC GGCGAGCGCA TGAGGCGTGA GGCCTCAGCC
GGCAAGCAGA GCGGCCGTAC GCAGGAAATC CAGCGGTTGA TCGGGCGGTC TCTCAGAGCG
GTCGTCGACC TGCCGGCGCT CGGCGAGCGC CAGATCTCGG TGGATTGTGA CGTGATCCAG
GCCGATGGCG GTACGCGCAC GGCATCGATT ACCGGTGCCT GGATTGCCCT CCACGACTGT
CTGAAGTGGA TGGAGGCCCG CAACATGGTC AAGCTGGAGA AGGTCTTGAA GGACCATGTT
GCCGCCATTT CCTGCGGCAT TTTCGCCAGC CAGCCGGTGG TGGACCTCGA CTATCTGGAG
GACTCGGCTG CGGAGACGGA TGCCAACTTC GTCATGACGG GCAGCGGCGG CCTCGTCGAA
ATCCAGGGAA CTGCGGAAGG CAAACCCTTC AGCGAGGAAG AATTCGCAAG TCTGATGCTG
CTCGCCAAGA ACGGAATCGC CGAGCTCATC GAAATGCAAA AGCTGGCGAT CGCCGGCTGA
 
Protein sequence
MRPSGRKTDQ MRKVSFERNF SKHAEGSCLV RFGDTHVLCT ASLEDKVPGW LRNGGKGWVT 
AEYGMLPRAT GERMRREASA GKQSGRTQEI QRLIGRSLRA VVDLPALGER QISVDCDVIQ
ADGGTRTASI TGAWIALHDC LKWMEARNMV KLEKVLKDHV AAISCGIFAS QPVVDLDYLE
DSAAETDANF VMTGSGGLVE IQGTAEGKPF SEEEFASLML LAKNGIAELI EMQKLAIAG