Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0010 |
Symbol | rph |
ID | 5320837 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 8747 |
End bp | 9466 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640788941 |
Product | ribonuclease PH |
Protein accession | YP_001325705 |
Protein GI | 150395238 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0689] RNase PH |
TIGRFAM ID | [TIGR01966] ribonuclease PH |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.000167054 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGGCCAT CCGGCAGAAA AACCGACCAA ATGCGCAAGG TCTCGTTCGA GCGCAATTTC TCCAAGCATG CGGAAGGATC CTGCCTGGTA CGTTTCGGCG ATACGCACGT GCTCTGCACT GCAAGCCTGG AGGACAAAGT TCCGGGATGG CTCCGCAACG GCGGCAAAGG CTGGGTCACT GCGGAATACG GCATGCTGCC GCGTGCGACC GGCGAGCGCA TGAGGCGTGA GGCCTCAGCC GGCAAGCAGA GCGGCCGTAC GCAGGAAATC CAGCGGTTGA TCGGGCGGTC TCTCAGAGCG GTCGTCGACC TGCCGGCGCT CGGCGAGCGC CAGATCTCGG TGGATTGTGA CGTGATCCAG GCCGATGGCG GTACGCGCAC GGCATCGATT ACCGGTGCCT GGATTGCCCT CCACGACTGT CTGAAGTGGA TGGAGGCCCG CAACATGGTC AAGCTGGAGA AGGTCTTGAA GGACCATGTT GCCGCCATTT CCTGCGGCAT TTTCGCCAGC CAGCCGGTGG TGGACCTCGA CTATCTGGAG GACTCGGCTG CGGAGACGGA TGCCAACTTC GTCATGACGG GCAGCGGCGG CCTCGTCGAA ATCCAGGGAA CTGCGGAAGG CAAACCCTTC AGCGAGGAAG AATTCGCAAG TCTGATGCTG CTCGCCAAGA ACGGAATCGC CGAGCTCATC GAAATGCAAA AGCTGGCGAT CGCCGGCTGA
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Protein sequence | MRPSGRKTDQ MRKVSFERNF SKHAEGSCLV RFGDTHVLCT ASLEDKVPGW LRNGGKGWVT AEYGMLPRAT GERMRREASA GKQSGRTQEI QRLIGRSLRA VVDLPALGER QISVDCDVIQ ADGGTRTASI TGAWIALHDC LKWMEARNMV KLEKVLKDHV AAISCGIFAS QPVVDLDYLE DSAAETDANF VMTGSGGLVE IQGTAEGKPF SEEEFASLML LAKNGIAELI EMQKLAIAG
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