Gene Smed_0007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0007 
Symbol 
ID5320834 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp6437 
End bp7582 
Gene Length1146 bp 
Protein Length381 aa 
Translation table11 
GC content63% 
IMG OID640788938 
Productcoproporphyrinogen III oxidase 
Protein accessionYP_001325702 
Protein GI150395235 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 
TIGRFAM ID[TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.000223665 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGACCCCG GTTTCGGGGT CTATGTGCAC TGGCCGTTCT GCGCGGCGAA ATGCCCCTAT 
TGCGATTTCA ACAGCCACGT CCGCCACACG CCGGTGGAGC AGCCCCGTTT CGTCGCCGCC
TTCCTGAAGG AAATGGCGGC AGTGCGCGAT CTTTCCGGGC CCAGAACCGT CACCAGCATT
TTCATGGGCG GGGGCACTCC GTCGCTGATG GACCCTCAGA CGGTGGAGGC GATCCTCGAT
GGCATAGCCA GGCACTGGCA TGTGCCTGAC GGCATCGAGA TTACCATGGA GGCCAACCCC
TCAAGCGTCG AGGCGACGCG CTTTCGCGGC TATCGGGCCG CCGGCGTCAA CCGCGTCTCG
CTTGGCGTCC AGGCGCTGAA CGATCGCGAC CTGAAATTCC TCGGAAGGCT GCACAATGTC
GAGGATGCCC TCAAGGCGAT ACGGCTCGCG CGCGAGATCT TTCCGCGTAT GTCCTTCGAC
CTGATCTATG CGCGGCCCAA CCAGACCGTC GAGGAATGGG AGCGGGAGCT GAAGGAGGCG
GTCTCCTACG CCGTCGATCA TCTGTCTCTC TACCAATTGA CCATCGAGGA AGGCACTCCG
TTTTACGGTC TGCACAAGGC AGGCAAGCTC ATCGTTCCGG ACGGCGAGCA GTCGGCGGTG
CTTTATGAAG CGACCCAGGA GATCACCGCC GACATCGGCA TGCCCGCCTA TGAGGTGTCC
AACCATGCCC GGCCGGGCGC CGAGAGCCGG CACAACCTCA CCTATTGGCG CTATGGCGAC
TATGCGGGCA TCGGCCCCGG CGCTCACGGC CGGCTGCAGG TCGGATCGGG CAAGATCGCG
ACCGCAACCG AGCGCAACCC CGAGGCCTGG CTGCAAAACG TCGAAGAGCA TGGTGACGGC
ATGGTCGAAC GGGAGTTTCT CGATTTCGAG GCACAGGCCG ATGAGCTTTT GCTGATGGGG
TTGAGACTGC GCGAAGGTGT CGATCTGGCC CGGTGGCAGA GTCTCTCGGG CCGCAATCCG
GACCCGGCCC GGGAAGAATT CCTGATAGAA CACGGCTTCA TAGAACGTAT CGGCAATTCG
CGGCTGCGCT GCACGCCCTC CGGCATGCTC ATTTTGGATG CCGTGGTAGC CGACCTCGCC
TGCTGA
 
Protein sequence
MDPGFGVYVH WPFCAAKCPY CDFNSHVRHT PVEQPRFVAA FLKEMAAVRD LSGPRTVTSI 
FMGGGTPSLM DPQTVEAILD GIARHWHVPD GIEITMEANP SSVEATRFRG YRAAGVNRVS
LGVQALNDRD LKFLGRLHNV EDALKAIRLA REIFPRMSFD LIYARPNQTV EEWERELKEA
VSYAVDHLSL YQLTIEEGTP FYGLHKAGKL IVPDGEQSAV LYEATQEITA DIGMPAYEVS
NHARPGAESR HNLTYWRYGD YAGIGPGAHG RLQVGSGKIA TATERNPEAW LQNVEEHGDG
MVEREFLDFE AQADELLLMG LRLREGVDLA RWQSLSGRNP DPAREEFLIE HGFIERIGNS
RLRCTPSGML ILDAVVADLA C