| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0004 |
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| Symbol | |
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| ID | 5320831 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 3456 |
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| End bp | 4739 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640788935 |
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| Product | RNA polymerase ECF-subfamily sigma factor |
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| Protein accession | YP_001325699 |
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| Protein GI | 150395232 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.122751 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000113113 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCGACA CAGCCTGGAT CGATCTCGCA CTGGTTTCCG CACGGCCACA GGCCATGGGT
GCGTTGCTGC GATACTTTCG CAGCCTCGAC CTGGCGGAGG AGGCGTTCCA GGAAGCCTGC
ATCCGGGCAC TGAAAAACTG GCCGCGTACC GGTCCTCCGC GCGATCCCGC CGCCTGGCTG
ATCTTCGTCG GCCGCAACAG CGGCATCGAC CGGGTGCGCA GGCAGTCGCG CGAGACGGCA
TTGCCGCCGG AGGAACTGCT CTCCGACCTT GGCGACAGGG AGAGCGAGCT CGCCGATCGC
CTCGATGGCG CACACTATCG CGACGATATC CTGCGGCTGC TTTTCGTCTG CAGCAATCCG
GCGCTTCCGG CGACCCAGCA GATCGCGCTT GCACTGCGCA TCGTATCGGG CCTTTCCGTC
AGGCAGATAG CCCGTGCCTT TCTTGTCGGC GAGGCGGCGA TGGAGCAGCG CATCACCCGC
GCCAAGGCGC GTGTTGCGGC CGCCGGCATC CCTTTCGAAA CGCCCGATGC CGCCGACCGG
GCGGAGCGCC TCGCTGCAGT CGCGACGATG ATCTATCTTG TCTTCAACGA GGGCTACTCG
GCGATGAACG GCCCCGAGGG TGTCTCCGCA GATCTCTGCG ACGAGGCGAT CCGCCTGTCC
CGGCTGCTTC TTCGGCTGTT TCCGGCCGAG CCGGAGATCA TGGGGCTGGC GGCGCTTCTG
CTCCTCCAGC ATTCGCGCGC CCGCGCTCGG TTCGATGCCG CTGGCGCCGT GGTCCTGCTC
GAAGATCAGG ATCGGCAGCT CTGGAACCGG CCGATGATCA CCGAGGCGCT GGCGATGATC
GACAAAGCGA TGCGCCACCG GCGTCCCGGT CCCTATCAGA TCCAGGCCGC AATCGCTGCC
CTGCACGCCC GCGCCTCACG GCCGGAGGAA ACGGATTGGG AGGAAATAGA CCTCCTTTAC
CAGGCGCTCG AACGCCTGCA GCCCTCACCC GTCGTGACCC TCAATCGCGC CGTCGCGGTT
TCGAAACGCG AGGGGCCCGA GGCCGCGCTG GCGATGATTG AGCCTTTGGG CGAGCGGCTG
TCCGGCTACT TCTATTATCA TGGGCTGCGC GGCGGCCTCC TGAAGCGGCT TGGCCTTGCA
TGCGAGGCGC GCAAAGCTTT CAACCAGGCA ATCGCACTCG CCACCAACGC GGCCGAAGCG
GCCTATATCC GGACCCAGCT CGATCACCTC GCGGCTGCGC CGATGCCGGA ACCTTCCTTC
TCAAGTGATT GTCCTGGCGC GTAG
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| Protein sequence | MTDTAWIDLA LVSARPQAMG ALLRYFRSLD LAEEAFQEAC IRALKNWPRT GPPRDPAAWL
IFVGRNSGID RVRRQSRETA LPPEELLSDL GDRESELADR LDGAHYRDDI LRLLFVCSNP
ALPATQQIAL ALRIVSGLSV RQIARAFLVG EAAMEQRITR AKARVAAAGI PFETPDAADR
AERLAAVATM IYLVFNEGYS AMNGPEGVSA DLCDEAIRLS RLLLRLFPAE PEIMGLAALL
LLQHSRARAR FDAAGAVVLL EDQDRQLWNR PMITEALAMI DKAMRHRRPG PYQIQAAIAA
LHARASRPEE TDWEEIDLLY QALERLQPSP VVTLNRAVAV SKREGPEAAL AMIEPLGERL
SGYFYYHGLR GGLLKRLGLA CEARKAFNQA IALATNAAEA AYIRTQLDHL AAAPMPEPSF
SSDCPGA
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