| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_3024 |
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| Symbol | prpD |
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| ID | 6475841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Stenotrophomonas maltophilia R551-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011071 |
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| Strand | - |
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| Start bp | 3373812 |
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| End bp | 3375272 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642732219 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_002029406 |
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| Protein GI | 194366796 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGATA ACCACACCCC ATCCAACGAG CGTGCAGCGT GGGATGCGCT GCTGGTGGAC
ATCGTCGACT ACGTGCGCGA CGCGCGCATC GACTCACCCC TGGCGTTCCA GACCGCGCAC
CACTGCCTGC TCGACACGCT GGGCTGCGGT TTGGAAGCGC TGTCCTTCCC GGCCTGCAGC
AAGCTGCTCG GTCCTCTGGT GCCGGGCATC AGCGTGGTCA ACGGCGCGCG CGTACCGGGC
ACGCACTACG TGCTGGACCC GGTGCAGGCC GCCTTCAACC TGGGCGCGAT GGTGCGCTGG
CTGGATTTCA ACGACACATG GCTGGCCGCC GAATGGGGCC ACCCGTCGGA CAACCTCGGC
GGCATCCTCG CCGTCTGCGA TTGGCTGGGA CGCAATGCGC AGGCCCTGCG CCGCCCGCCG
CCGACCGTGC AGGACGTGCT GCTGGCGATG ATCAAGGCGC ATGAGATCCA GGGCGTGTTG
GCGCTGAAGA ATTCGTTCAA CCGGGTCGGG CTGGACCATG TGGTGCTGGT CAAGGTGGCG
ACCACCGCCG TGGTAGCGCA GCTGCTCGGG CTTGATCGCG AACGCATGCT CAATGCAGTG
TCGCTGGCCT GGGTCGATGG CCAGGCGCTG CGGACCTACC GGCACGCGCC CAACACCGGC
TCGCGCAAGA GCTGGGCCGC CGGCGATGCC ACCAGCCGTG GCGTGCGCCT GGCGCTGATC
GCGGCAACGG GTGAAATGGG CTATCCGAGC GTGCTCAGTG CACCGACCTG GGGCTTCGAG
GCAGTGTCCA TGCATGGCCA GGCATTGACG CTGGAGAGAC CGCTGGGCAG CTATGTGATG
GAGAACGTGC TGTTCAAGAT CAGCTACCCG GCCGAGTTCC ACGGCCAGAC CGCAGTGGAG
GCAGCGATTA CGCTGCACCA GCAATTGCGC GTGGCCGGGC GGCGCGCCGA GGACATCGAA
CACATCGCGA TCCGGACCCA GGACGCCTGC ATCCGCATCA TCGACAAGCA GGGCCCGCTG
CACAATCCGG CCGACCGCGA CCACTGCGTG CAGTACATGA TCGCCATCGC GCTGCTGCAT
GGGCGGCTGG TGGCCGAGGA CTATGAGGAC GACGTCGCCG CCGATCCGCG CATCGACGCA
TTGCGCGCAA AGATGGCCTG CCACGAGGAT CCGCAGCTCA GCGCCGACTA CCTGGACCCG
GACAAGCGCA GCATCGCCAA CGGCCTCAGC GTGCGCTTCA ACGATGGCAG CGAACTGCCG
GAGGTGCTGG TGGAGTACCC GCTCGGCCAT GCCCGGCGCC GCGAGGAAGG CATTCCGCTG
CTGAAGGACA AGTTCCGCCG GCACCTGGCC CATCGCTTCC CGACCGCCCA GCAGCAGCGC
ATCCTGGCGG CATCGCTGGA CCCGGTGGCG CTGGCGGCGA TGCCGGTGAC CGATTACGTG
GACCTGTACC TGCCGGGGTA G
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| Protein sequence | MSDNHTPSNE RAAWDALLVD IVDYVRDARI DSPLAFQTAH HCLLDTLGCG LEALSFPACS
KLLGPLVPGI SVVNGARVPG THYVLDPVQA AFNLGAMVRW LDFNDTWLAA EWGHPSDNLG
GILAVCDWLG RNAQALRRPP PTVQDVLLAM IKAHEIQGVL ALKNSFNRVG LDHVVLVKVA
TTAVVAQLLG LDRERMLNAV SLAWVDGQAL RTYRHAPNTG SRKSWAAGDA TSRGVRLALI
AATGEMGYPS VLSAPTWGFE AVSMHGQALT LERPLGSYVM ENVLFKISYP AEFHGQTAVE
AAITLHQQLR VAGRRAEDIE HIAIRTQDAC IRIIDKQGPL HNPADRDHCV QYMIAIALLH
GRLVAEDYED DVAADPRIDA LRAKMACHED PQLSADYLDP DKRSIANGLS VRFNDGSELP
EVLVEYPLGH ARRREEGIPL LKDKFRRHLA HRFPTAQQQR ILAASLDPVA LAAMPVTDYV
DLYLPG
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