| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_2971 |
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| Symbol | rumA |
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| ID | 6475718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Stenotrophomonas maltophilia R551-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011071 |
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| Strand | - |
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| Start bp | 3308521 |
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| End bp | 3309855 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642732166 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_002029353 |
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| Protein GI | 194366743 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.422086 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0000745246 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGCCCGAT CCCGTTCCCG CATCGACCGT ACCCCGTTCC AGACCGAAAT CCTCGACCTC
AGCCATGATG GTCGCGGCGT CGCCCGCCGT GAAGGCGAGG GTGGCAAGGT CACCTTCGTC
AGCGGCGCCC TGCCGGGTGA GGTGGTCATG GCTGAACAGA CCGCCCGTAG CCGCCATTTC
GACGAAGCGC GTACGGTGGA AGTGCTGAAG GCCTCGCCGC AGCGCGTCAC CCCGAAGTGT
CCGCACTTCG GCACCTGCGC TGGCTGCGTG CTGCAGCACC TGGACGAAGA CCAGCAGATC
GTCGCCAAGC AGCGCGTGCT GATGGACAAC CTGGAGCGCA TCGGCCACGT GAAGCCGGGC
ACTGTGCTGG CGCCGCTGGT CGGTGAGAGC TGGGGCTACC GCCGCAAGGG CCGCTTCTCG
GTGCGCCGGG TCGAGAAGAA GGACAAGACC CTGGTCGGTT TCCGTGAACA GGACCCGCGA
TTCGTGGCCG ATCTCAGCCA GTGCCTGACC GTGATCCCGG AAATCGGCAC CAAGGTCGAG
GCGTTGTCGA CCTTCATCGA GTCGCTTGAT GGCAAGCGCG ACATCCCGCA GATCGAATTC
ATCGCCGGTG ACCAGGCCGT GGTCCTGACC GTGCGCCACC TGCAGCCCCT GAGCGATGCC
GATCGTGCCG CCTGGGCCAC CTTCGGCCAG CAGCATGGCT TCGTGATCTA CCTGCAGTCC
GGTGGCGTGG ATACCGTGCA GCCGCTGGAC GGGCAGGGCG TGCCGCTGTC GTTCCGGCTT
GCGCCGTGGG ACGTGGAGCT GGCGTTCCGT CCGCTGGACT TCATCCAGGT CAACGCCAAG
CTCAACGAGA AGATGATCGC CCATGCCCTG GATCTGCTGG AGCCGGGTGA GGACGAGCGC
GTGCTGGACC TGTTCTGCGG CCTGGGCAAT TTCACCCTGC CGCTGGCCCG CCGTGTGCGC
GAAGTGGTGG GTGTGGAAGG CGATGCCGGC CTTGTCGCCC GCGCCCGAGA GAATGCCGAG
CGCAACGGCC TGGCCAATGC CCAGTTCTTC AGCGCCGATC TGACCCAGGA CCAGCGCAGC
ACGGCGTGGA TGCGCCAGGG CTTCGACAAG CTGCTGCTGG ACCCGCCGCG TTCGGGCGCG
ATCGAAGTGC TGCAGCAGCT GCCGCTGAAG CAGTTCAAGC GCATCGTCTA CGTCAGCTGC
CACCCGGGCT CGCTGGCGCG TGATGCCGGC TACCTGGTCA ACGAGCAGGG CTTCACCCTG
GTCAGCGCCG GCGCCATGGA CATGTTCCCG CATACCGCGC ACGTGGAAAG CATCGCGGTG
TTCGAGAAGC GCTGA
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| Protein sequence | MARSRSRIDR TPFQTEILDL SHDGRGVARR EGEGGKVTFV SGALPGEVVM AEQTARSRHF
DEARTVEVLK ASPQRVTPKC PHFGTCAGCV LQHLDEDQQI VAKQRVLMDN LERIGHVKPG
TVLAPLVGES WGYRRKGRFS VRRVEKKDKT LVGFREQDPR FVADLSQCLT VIPEIGTKVE
ALSTFIESLD GKRDIPQIEF IAGDQAVVLT VRHLQPLSDA DRAAWATFGQ QHGFVIYLQS
GGVDTVQPLD GQGVPLSFRL APWDVELAFR PLDFIQVNAK LNEKMIAHAL DLLEPGEDER
VLDLFCGLGN FTLPLARRVR EVVGVEGDAG LVARARENAE RNGLANAQFF SADLTQDQRS
TAWMRQGFDK LLLDPPRSGA IEVLQQLPLK QFKRIVYVSC HPGSLARDAG YLVNEQGFTL
VSAGAMDMFP HTAHVESIAV FEKR
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