| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_1812 |
|---|
| Symbol | carB |
|---|
| ID | 6475765 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 2031275 |
|---|
| End bp | 2034517 |
|---|
| Gene Length | 3243 bp |
|---|
| Protein Length | 1080 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642730994 |
|---|
| Product | carbamoyl phosphate synthase large subunit |
|---|
| Protein accession | YP_002028199 |
|---|
| Protein GI | 194365589 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
|---|
| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00557421 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0258544 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAAGC GCACTGACCT CAAGACCATC CTCATCATCG GTGCTGGCCC GATCGTCATC
GGCCAGGCCT GCGAGTTCGA CTACTCCGGC GCTCAGGCCT GCAAGGCCCT GCGTGACGAG
GGTTACCGCG TGGTGCTGGT CAACAGCAAC CCGGCCACGA TCATGACCGA CCCGGAGATG
GCCGACGCCG TCTACATCGA GCCGATCAAC TGGCAGACGG TCGAGAAGAT CATCGCCAAG
GAAAAGCCCG ATGCGCTGCT GCCGACCATG GGTGGCCAGA CCGCGCTGAA CTGCGCGCTG
GACCTGGCCG ACAACGGCGT ACTGGAGAAG TACAACGTTG AACTGATCGG CGCCAAGCGC
GAAGCGATCC GGATGGCCGA AGACCGCGAG CTGTTCCGCG TCGCCATGGG TGAGATCGGC
CTGGAATGCC CGACCGCCGC CGTCGCCCAC ACGCTGGACG AAGCGCTGGA GATCCAGACC
CGCGTCGGCT ACCCGACCAT CATCCGCCCC AGCTTCACCC TGGGCGGCAG CGGTGGCGGC
ATCGCCTACA ACCGCGAAGA ACTGGTCGAC ATCGTCAGCC GTGGCCTGGA GCTGTCGCCG
ACCACCGAAG TGCTGGTGGA AGAGTCGGTG CTGGGCTGGA AGGAATTCGA AATGGAAGTG
GTCCGCGATA CGGCGGACAA CTGCATCATC GTCTGCTCGA TCGAGAACCT GGACCCGATG
GGCGTGCACA CCGGTGACTC GATCACCGTG GCCCCGGCGC AGACCCTGAC CGACAAGGAA
TACCAGCGCC TGCGCGATGC CTCCATCGCC GTGCTGCGCA AGATCGGCGT GGATACCGGT
GGCTCGAACG TGCAGTTCGG CATCAACCCG GACACCGGCC GCGTCGTGGT GATCGAGATG
AACCCGCGCG TGTCTCGTTC CTCGGCGCTG GCTTCCAAGG CCACCGGCTT CCCGATCGCC
AAGGTCGCCG CCAAGCTGGC CGTCGGCTAC ACCCTGGACG AACTGAAGAA CGAGATCACC
GGCGGCCTGA CCCCGGCCTC GTTCGAACCG TCCATCGACT ACGTCGTCAC CAAGATCCCG
CGCTTCGCCT TCGAGAAGTT CCCGGCCGCC GATGCGCGCC TGACCACCCA GATGAAGTCG
GTGGGTGAGG TGATGGCGAT GGGCCGCACC TTCCAGGAAT CGATGCAGAA GGCACTGCGC
GGCCTGGAGA CCGGCAAGGT CGGCTTCGAC CCGACCGGCC TGGACCTGAC CAATGAAGAC
GATCTGCAGA CCCTGCGCCG CGAGCTGAAG GCACCGGGCC CGGAGCGCCT GTTCTTCGTC
GCCGACGCAT TCCGTGCCGG CATGAGCGTG GAGGACATCT TCAAGCTGTC CTACATCGAT
CCGTGGTTCC TGGACCAGAT CGAAGAGATC ATCGCCGCTG AAGCCGCTGT CGCCGCCGAC
GGCATTGATG CGCTGGACGC CGCGCGCCTG CGCAAGCTGA AGCGTTCCGG TTTCTCCGAT
GCGCGCCTGG CGCAGCTGAC CGGCACCAAT GAAGCGGCCA TCCGCGCGCT GCGTCGTGCG
CACAAGGTGC GCCCGGTCTA CAAGCGCGTT GACTCCTGCG CCGGTGAATT CTCCACCGGT
ACCGCCTACC TGTACTCGAC CTACGAGGAC GAGTGCGAGG CCGCGCCGAG CAACCGCGAC
AAGATCATGA TCCTGGGCGG TGGCCCGAAC CGCATCGGCC AGGGCATCGA GTTCGACTAC
TGCTGCGTGC ACGCGGCACT GGCGCTGCGC GAGGATGGTT ATGAAACCAT CATGGTCAAC
TGCAACCCGG AAACCGTGTC GACCGACTAC GACACCTCCG ACCGCCTGTA CTTCGAACCG
CTGACCCTGG AAGACGTGCT GGAAATCGTC GAACTGGAAC AGCCCAAGGG CGTGATCGTG
CAGTACGGTG GCCAGACCCC GCTGAAGCTG GCGCGGGCGC TGGAAGCCAA CGGCGTGCCG
GTGATCGGTA CCAGCCCTGA TTCCATCGAC CTGGCCGAAG ACCGCGAGCG CTTCCAGCAG
CTGGTCGACA ACCTGGGCCT GAAGCAGCCG CCGAACCGCA TCGCACGCAA CGACCAGGAA
GCCCTGCTGC TGGCGCGCGA GATCGGCTAC CCGCTGGTGG TGCGCCCGAG CTACGTGCTG
GGCGGCCGCG CCATGGAAAT CGTCTACGGC GAATCCGACC TGGCCCGTTA CGTGCGCGAC
GCGGTGAAGG TGTCCAACGA TTCGCCGGTG CTGCTGGACC GCTTCCTCGA CAACGCCGTG
GAAGTGGATG TGGACATCAT TGCCGATGCA CAGGGCAACG TGCTGATCGG CGGCGTGATG
GAGCACATCG AAGAAGCCGG CGTGCATTCG GGCGATTCGT CCTGCTCGCT GCCGCCGTAC
TCGCTGTCCG CCGCCACCCA GGCCGAGCTG CGCCGCCAGG TGGTGGAGCT GGCCAAGGCC
CTGAACGTGG TCGGCCTGAT GAACACCCAG TTCGCGATCC AGACCAGCGA CGAGGGTGAT
GACACCATCT ACCTGCTGGA AGTGAACCCG CGTGCCTCGC GCACCGTGCC GTTCGTGTCC
AAGGCCACCG GCATGCCGCT GGCCAAGATC GCTGCCCGCT GCATGGCCGG AAAGACCCTG
GCCGAGCAGG GCGCGACCAA GGAAATCGTG CCGGATTACT ACTCGGTGAA GGAAGCGATC
TTCCCGTTCG CCAAGTTCCA GGGCGTCGAT CCGATCCTCG GGCCGGAAAT GCGCTCCACC
GGTGAGGTGA TGGGCGTAGG CCGTACCTTC AACGCCGCCT TCGCGCGTGC GCAGGAGGCG
GGCGGCATCA AGGCACCGCC GGTCGGCAAG GCCTTCGTCT CGGTCCGCGA TCCGGACAAG
AAGCGCGTAC TGCCGGTGGC CAAGGCACTG CTGGCACGTG GCTACAGCCT GGTTGCCACC
CGTGGCACCG CCGCGTGGCT GCAGCAGCAC GGCATGGACT GCGAGATCAT CAACAAGGTG
GTCGAAGGCC GTCCGCACAT CGTCGACTCG ATCAAGAACG GCGAGATCGT CTACATCGTC
AACACGACCG AAGGTCGTTC GGCGATCAAC GACTCGTTCT CGATCCGTCG CGAGGCGCTG
CAGCACCGCG TCACCTACTC GACCACCATT GCCGGCGCCA AGGCGCTGGT GGATTCACTG
GAATTCCGCG GCACCGGCCC TGTCTGGTCG CTGCAGGAGC TGCACAAGGA GTTGAATGCA
TGA
|
|---|
| Protein sequence | MPKRTDLKTI LIIGAGPIVI GQACEFDYSG AQACKALRDE GYRVVLVNSN PATIMTDPEM
ADAVYIEPIN WQTVEKIIAK EKPDALLPTM GGQTALNCAL DLADNGVLEK YNVELIGAKR
EAIRMAEDRE LFRVAMGEIG LECPTAAVAH TLDEALEIQT RVGYPTIIRP SFTLGGSGGG
IAYNREELVD IVSRGLELSP TTEVLVEESV LGWKEFEMEV VRDTADNCII VCSIENLDPM
GVHTGDSITV APAQTLTDKE YQRLRDASIA VLRKIGVDTG GSNVQFGINP DTGRVVVIEM
NPRVSRSSAL ASKATGFPIA KVAAKLAVGY TLDELKNEIT GGLTPASFEP SIDYVVTKIP
RFAFEKFPAA DARLTTQMKS VGEVMAMGRT FQESMQKALR GLETGKVGFD PTGLDLTNED
DLQTLRRELK APGPERLFFV ADAFRAGMSV EDIFKLSYID PWFLDQIEEI IAAEAAVAAD
GIDALDAARL RKLKRSGFSD ARLAQLTGTN EAAIRALRRA HKVRPVYKRV DSCAGEFSTG
TAYLYSTYED ECEAAPSNRD KIMILGGGPN RIGQGIEFDY CCVHAALALR EDGYETIMVN
CNPETVSTDY DTSDRLYFEP LTLEDVLEIV ELEQPKGVIV QYGGQTPLKL ARALEANGVP
VIGTSPDSID LAEDRERFQQ LVDNLGLKQP PNRIARNDQE ALLLAREIGY PLVVRPSYVL
GGRAMEIVYG ESDLARYVRD AVKVSNDSPV LLDRFLDNAV EVDVDIIADA QGNVLIGGVM
EHIEEAGVHS GDSSCSLPPY SLSAATQAEL RRQVVELAKA LNVVGLMNTQ FAIQTSDEGD
DTIYLLEVNP RASRTVPFVS KATGMPLAKI AARCMAGKTL AEQGATKEIV PDYYSVKEAI
FPFAKFQGVD PILGPEMRST GEVMGVGRTF NAAFARAQEA GGIKAPPVGK AFVSVRDPDK
KRVLPVAKAL LARGYSLVAT RGTAAWLQQH GMDCEIINKV VEGRPHIVDS IKNGEIVYIV
NTTEGRSAIN DSFSIRREAL QHRVTYSTTI AGAKALVDSL EFRGTGPVWS LQELHKELNA
|
|---|
| |