Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smal_1226 |
Symbol | |
ID | 6475078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stenotrophomonas maltophilia R551-3 |
Kingdom | Bacteria |
Replicon accession | NC_011071 |
Strand | + |
Start bp | 1393290 |
End bp | 1395713 |
Gene Length | 2424 bp |
Protein Length | 807 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642730391 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_002027614 |
Protein GI | 194365004 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.0558955 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTAGGA GTGGCACGGA CCAACACAGC CGGCGGGTGC CGATGACCCG TGGGCTGGGA CTGCGATTTG CGTTGCTGAC GGGCATGGCG ATCGGGCTGG TCGCCTTGTC CGCCCTGATC CAGGAGCTGC AGGCGGCGTC CACGGCCTGG ATTGCCGGGC AGGGCTACTG GTCGCGGGGG CAGCAGGATG CGACCGCTGC GCTCAGCCGC TATCTGGCGC GCGGCGACGC ACAGGACCTG GACGATGCGC GGCAGGCGCT GCAGGTGCCC TTGGGCGACC TGCAGGGGCG GCTGGCACTG GAGCAGGCTG AACCCGATGA GTCACGGGCC CGGCAGGGCT TCCTGCAGGG CGGCAATGCC CGTGCCGATG TACCGCGGTT GGTGTTCTCG TTCCGCTATG CGCGCGATCT GGGCGCTTTC CGCGAAGCAA CCGCGCTGTG GCGGCAGACC GATGGCGACC TGATGGCGGT GCAGAATCTG GTCGCGGAGC TGCAGCGACG GCATGCCGGA GGCAGCTTGC CGGTGGCCGA TCGCGATCGC TACCTGCAGC AGCTGCGGGA TCTTGATCGA CGCCTGCAGG TACAGGCGCA GGCGTTCTCG CAGGCGCTGC TGCGGATGGC CACGATGGTG CGGGTGGCGA CGCTGATGGT CGGCGGCCTG TCGGTACTGG CGATCAGCCT GATGGCGGTG GCCCTGGCGC GTCGCGTCGG CAAGGACCTG ACCGAGCACG AGAGCCGCTT CCGAGCCGCG TTCTACCAGG CCAACGTCGG CATGCTCAAG CTCGACACCG ATGGCAAGGT GATGGAAGCC AACCAGGCGA TGGCCGATAT CCTCGACTAT CGCCGCGACG TGCTGCTGCA GATGTCACTG GGTGATCTGC TGATGGAGGG CGAACTGGTC ATCGATGGCG TGGGCCGCAT CGACTGGGAC CGGCAGCTGC GACCGAGCGA GCTGCGCTTC TGCCGCCGCG ATGGCAGCCT GGTCTGGGGG CGCTGGAGTG GTACCGGCGT GCGCAGTGCC GGTGGTGGGC TGTCGGTGTT TGCGATCATC GAGGACGTCA GCCAGAACCA TGCACTGGCG CGCGAGATCG AGCATCACGC CAGCCACGAT CCGTTGACAG GTCTGATCAA CCGCCGCGAG ATCGAGCGGC TGCTGGAACG TTCGCTGCTG CAGGTGCGCA GCGAGGGCGG CACGCATTCG CTGTGCTACA TCAACCTGGA TCACTTCAAG CTGGTCAACG ACAGTTTCGG CCACGCTGCC GGTGACCAGA TGCTGCGCAG TTTCGCCGAC TACCTGGTGG CAGCGGTGCG TGATGGCGAC TGGGTGGGCC GGCTCGGTGC CGACGAATTT GCGGTGTTCC TCGCCCATGC CGGGCAGGAC GAGGCCAAGC GGGTACTGCA ACGGGTAATC CGCAACCTGG GCCAGGCCAC GTTCCCGATC AGCGAGGGCA GCCCGCAGTT GAGCTGCAGC ATCGGCGTGG TCGAGGTCAA TGCCGAGGCG CCGGACGCGA ACTGGTTGAT GAGCGCCGCC GACAGCGCCT GCTATGCGGC CAAGCAGGCC GGCCGCAACC GTGTGCACTG CTTCAACGAG AACCGCCTGG CGCTGGAGGA GCGGCGCCAG GAAGCCGAGC GCCTGCAGGG CGTCAGCCTG GCGATGGCCG AGAACCGCAT GCTGTTGTAT GCACAACGCA TCGCCCGGGT GGGGGATCCG TCCTACCTGC ACTACGAAGT GCTGGTGCGC ATGCGTGGTA CCGATGGCAG CCTGCACCTG CCCGGCCAGT TCATGCCGGC CGTGGAGCGC TATGGCATGG CGGTGGCGCT GGACCGGCAC GTGCTGGGGC TGCTGTTTCG CCACCTGCAG GTCTGCCCGG CACACGTGCG CCAGCTGGGG CTGTGCAACG TCAATGTGTC TGCGCAGTCG ATCGCCGAGC CCGGCTTCCT TGCCTTCGTC TGCGATCTGC TCGAGCGCAA CCGCGCGCTG GCCTCGAAGC TGTGTTTCGA GATCACCGAG ACCGCGGCGA TCAGCAACCT CAGCCAGGCC CGCGCTTTCA TCGATGCGGT GAAGGCACGC GGCTGCCGGA TGGCATTGGA CGATTTCGGC TCTGGCCTGT CCTCGTTCGG CTACCTGCGC CAATTGCCGG CCGACATCCT GAAGATCGAC GGCACCTTCG TGCGTGACAT GGATACCGAC CCGATCAGCC ACGCCACCGT GCGTGCGATC AGCGAGCTCG GCCGCGAGCT GCAGATGGAG GTGGTGGCCG AATGGGTGGA GACCGCCGAG GTGGCCGCCG CGCTGACCCG GCTCGGCGTG CAGGGGCTGC AGGGGTATGC GATCGAGCGA CCGCAGCCGC TGGAACGGAT GACCCTGAGT GACCTGAGGC CGGTGCGCCT GGTGGCGGTG AAGGGGCCTC CGGCCGCTGG CTGA
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Protein sequence | MGRSGTDQHS RRVPMTRGLG LRFALLTGMA IGLVALSALI QELQAASTAW IAGQGYWSRG QQDATAALSR YLARGDAQDL DDARQALQVP LGDLQGRLAL EQAEPDESRA RQGFLQGGNA RADVPRLVFS FRYARDLGAF REATALWRQT DGDLMAVQNL VAELQRRHAG GSLPVADRDR YLQQLRDLDR RLQVQAQAFS QALLRMATMV RVATLMVGGL SVLAISLMAV ALARRVGKDL TEHESRFRAA FYQANVGMLK LDTDGKVMEA NQAMADILDY RRDVLLQMSL GDLLMEGELV IDGVGRIDWD RQLRPSELRF CRRDGSLVWG RWSGTGVRSA GGGLSVFAII EDVSQNHALA REIEHHASHD PLTGLINRRE IERLLERSLL QVRSEGGTHS LCYINLDHFK LVNDSFGHAA GDQMLRSFAD YLVAAVRDGD WVGRLGADEF AVFLAHAGQD EAKRVLQRVI RNLGQATFPI SEGSPQLSCS IGVVEVNAEA PDANWLMSAA DSACYAAKQA GRNRVHCFNE NRLALEERRQ EAERLQGVSL AMAENRMLLY AQRIARVGDP SYLHYEVLVR MRGTDGSLHL PGQFMPAVER YGMAVALDRH VLGLLFRHLQ VCPAHVRQLG LCNVNVSAQS IAEPGFLAFV CDLLERNRAL ASKLCFEITE TAAISNLSQA RAFIDAVKAR GCRMALDDFG SGLSSFGYLR QLPADILKID GTFVRDMDTD PISHATVRAI SELGRELQME VVAEWVETAE VAAALTRLGV QGLQGYAIER PQPLERMTLS DLRPVRLVAV KGPPAAG
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