Gene Smal_1226 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_1226 
Symbol 
ID6475078 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp1393290 
End bp1395713 
Gene Length2424 bp 
Protein Length807 aa 
Translation table11 
GC content67% 
IMG OID642730391 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_002027614 
Protein GI194365004 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0558955 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTAGGA GTGGCACGGA CCAACACAGC CGGCGGGTGC CGATGACCCG TGGGCTGGGA 
CTGCGATTTG CGTTGCTGAC GGGCATGGCG ATCGGGCTGG TCGCCTTGTC CGCCCTGATC
CAGGAGCTGC AGGCGGCGTC CACGGCCTGG ATTGCCGGGC AGGGCTACTG GTCGCGGGGG
CAGCAGGATG CGACCGCTGC GCTCAGCCGC TATCTGGCGC GCGGCGACGC ACAGGACCTG
GACGATGCGC GGCAGGCGCT GCAGGTGCCC TTGGGCGACC TGCAGGGGCG GCTGGCACTG
GAGCAGGCTG AACCCGATGA GTCACGGGCC CGGCAGGGCT TCCTGCAGGG CGGCAATGCC
CGTGCCGATG TACCGCGGTT GGTGTTCTCG TTCCGCTATG CGCGCGATCT GGGCGCTTTC
CGCGAAGCAA CCGCGCTGTG GCGGCAGACC GATGGCGACC TGATGGCGGT GCAGAATCTG
GTCGCGGAGC TGCAGCGACG GCATGCCGGA GGCAGCTTGC CGGTGGCCGA TCGCGATCGC
TACCTGCAGC AGCTGCGGGA TCTTGATCGA CGCCTGCAGG TACAGGCGCA GGCGTTCTCG
CAGGCGCTGC TGCGGATGGC CACGATGGTG CGGGTGGCGA CGCTGATGGT CGGCGGCCTG
TCGGTACTGG CGATCAGCCT GATGGCGGTG GCCCTGGCGC GTCGCGTCGG CAAGGACCTG
ACCGAGCACG AGAGCCGCTT CCGAGCCGCG TTCTACCAGG CCAACGTCGG CATGCTCAAG
CTCGACACCG ATGGCAAGGT GATGGAAGCC AACCAGGCGA TGGCCGATAT CCTCGACTAT
CGCCGCGACG TGCTGCTGCA GATGTCACTG GGTGATCTGC TGATGGAGGG CGAACTGGTC
ATCGATGGCG TGGGCCGCAT CGACTGGGAC CGGCAGCTGC GACCGAGCGA GCTGCGCTTC
TGCCGCCGCG ATGGCAGCCT GGTCTGGGGG CGCTGGAGTG GTACCGGCGT GCGCAGTGCC
GGTGGTGGGC TGTCGGTGTT TGCGATCATC GAGGACGTCA GCCAGAACCA TGCACTGGCG
CGCGAGATCG AGCATCACGC CAGCCACGAT CCGTTGACAG GTCTGATCAA CCGCCGCGAG
ATCGAGCGGC TGCTGGAACG TTCGCTGCTG CAGGTGCGCA GCGAGGGCGG CACGCATTCG
CTGTGCTACA TCAACCTGGA TCACTTCAAG CTGGTCAACG ACAGTTTCGG CCACGCTGCC
GGTGACCAGA TGCTGCGCAG TTTCGCCGAC TACCTGGTGG CAGCGGTGCG TGATGGCGAC
TGGGTGGGCC GGCTCGGTGC CGACGAATTT GCGGTGTTCC TCGCCCATGC CGGGCAGGAC
GAGGCCAAGC GGGTACTGCA ACGGGTAATC CGCAACCTGG GCCAGGCCAC GTTCCCGATC
AGCGAGGGCA GCCCGCAGTT GAGCTGCAGC ATCGGCGTGG TCGAGGTCAA TGCCGAGGCG
CCGGACGCGA ACTGGTTGAT GAGCGCCGCC GACAGCGCCT GCTATGCGGC CAAGCAGGCC
GGCCGCAACC GTGTGCACTG CTTCAACGAG AACCGCCTGG CGCTGGAGGA GCGGCGCCAG
GAAGCCGAGC GCCTGCAGGG CGTCAGCCTG GCGATGGCCG AGAACCGCAT GCTGTTGTAT
GCACAACGCA TCGCCCGGGT GGGGGATCCG TCCTACCTGC ACTACGAAGT GCTGGTGCGC
ATGCGTGGTA CCGATGGCAG CCTGCACCTG CCCGGCCAGT TCATGCCGGC CGTGGAGCGC
TATGGCATGG CGGTGGCGCT GGACCGGCAC GTGCTGGGGC TGCTGTTTCG CCACCTGCAG
GTCTGCCCGG CACACGTGCG CCAGCTGGGG CTGTGCAACG TCAATGTGTC TGCGCAGTCG
ATCGCCGAGC CCGGCTTCCT TGCCTTCGTC TGCGATCTGC TCGAGCGCAA CCGCGCGCTG
GCCTCGAAGC TGTGTTTCGA GATCACCGAG ACCGCGGCGA TCAGCAACCT CAGCCAGGCC
CGCGCTTTCA TCGATGCGGT GAAGGCACGC GGCTGCCGGA TGGCATTGGA CGATTTCGGC
TCTGGCCTGT CCTCGTTCGG CTACCTGCGC CAATTGCCGG CCGACATCCT GAAGATCGAC
GGCACCTTCG TGCGTGACAT GGATACCGAC CCGATCAGCC ACGCCACCGT GCGTGCGATC
AGCGAGCTCG GCCGCGAGCT GCAGATGGAG GTGGTGGCCG AATGGGTGGA GACCGCCGAG
GTGGCCGCCG CGCTGACCCG GCTCGGCGTG CAGGGGCTGC AGGGGTATGC GATCGAGCGA
CCGCAGCCGC TGGAACGGAT GACCCTGAGT GACCTGAGGC CGGTGCGCCT GGTGGCGGTG
AAGGGGCCTC CGGCCGCTGG CTGA
 
Protein sequence
MGRSGTDQHS RRVPMTRGLG LRFALLTGMA IGLVALSALI QELQAASTAW IAGQGYWSRG 
QQDATAALSR YLARGDAQDL DDARQALQVP LGDLQGRLAL EQAEPDESRA RQGFLQGGNA
RADVPRLVFS FRYARDLGAF REATALWRQT DGDLMAVQNL VAELQRRHAG GSLPVADRDR
YLQQLRDLDR RLQVQAQAFS QALLRMATMV RVATLMVGGL SVLAISLMAV ALARRVGKDL
TEHESRFRAA FYQANVGMLK LDTDGKVMEA NQAMADILDY RRDVLLQMSL GDLLMEGELV
IDGVGRIDWD RQLRPSELRF CRRDGSLVWG RWSGTGVRSA GGGLSVFAII EDVSQNHALA
REIEHHASHD PLTGLINRRE IERLLERSLL QVRSEGGTHS LCYINLDHFK LVNDSFGHAA
GDQMLRSFAD YLVAAVRDGD WVGRLGADEF AVFLAHAGQD EAKRVLQRVI RNLGQATFPI
SEGSPQLSCS IGVVEVNAEA PDANWLMSAA DSACYAAKQA GRNRVHCFNE NRLALEERRQ
EAERLQGVSL AMAENRMLLY AQRIARVGDP SYLHYEVLVR MRGTDGSLHL PGQFMPAVER
YGMAVALDRH VLGLLFRHLQ VCPAHVRQLG LCNVNVSAQS IAEPGFLAFV CDLLERNRAL
ASKLCFEITE TAAISNLSQA RAFIDAVKAR GCRMALDDFG SGLSSFGYLR QLPADILKID
GTFVRDMDTD PISHATVRAI SELGRELQME VVAEWVETAE VAAALTRLGV QGLQGYAIER
PQPLERMTLS DLRPVRLVAV KGPPAAG