| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_0305 |
|---|
| Symbol | |
|---|
| ID | 6478101 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | - |
|---|
| Start bp | 370064 |
|---|
| End bp | 370756 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642729450 |
|---|
| Product | Rhomboid family protein |
|---|
| Protein accession | YP_002026693 |
|---|
| Protein GI | 194364083 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.000904763 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGTCT CCCTCCCGTC GCGCAAGAAG GCGGCCCTGC GCTGGGCCAC GCCCGTGCTG
TTTGCGGCAC TGTGGCTGGC GTTCCTGTGG TCGATCTCGC GTCCGGACGA CGCCCGGGGC
AGCCTCTGGC TGGACTGGGG CGCCCTGTCC ACCGGCCTGA CCCACCCGCT GGACTGGTGG
GCGACCCTGC AGGACGGCAG CGTGCTGCGG CTATTCACGG CCCTGTTCCT GCACGCAGAC
TGGTCACACC TGCTGGGCAA CCTGGTGTTC CTGCTCATCT TCGGCCTGCC CGCCGAGCGG
GTACTGGGGC CGTGGCGGTT GCTGCTGCTG TTCCTGGTCG GCGGTGCGGT CTCCAACCTG
GTGGCGATCT ACACCATGGG CAGCCCGGAC CAGATCATCA TCGGCGCCAG CGGCGCGGTG
TCCGCACTGA TCGGCGCCTA TCTGGCCCTG TTCCCGGGCG CCCGGCTGGG CGTGGTGATC
CCGCTCGGCC TGTTCCTGGA GTTCGTGCGC GCGCCGGCCT ACCTGCTGAT CGGCGTCTGG
GCCGCACTGC AGGTGGTGTT CGCTCACATC GGCCCGAGCT TCGGCATGGT CGCCTGGTGG
GCGCACATCG GCGGCTTCAT GTTCGGCCTG GTGTACGGGG TCTACGTGCG CGCCGCGATC
GCCCGCAAGC TGCGCAAGCG CCACGGTTTC TGA
|
|---|
| Protein sequence | MFVSLPSRKK AALRWATPVL FAALWLAFLW SISRPDDARG SLWLDWGALS TGLTHPLDWW
ATLQDGSVLR LFTALFLHAD WSHLLGNLVF LLIFGLPAER VLGPWRLLLL FLVGGAVSNL
VAIYTMGSPD QIIIGASGAV SALIGAYLAL FPGARLGVVI PLGLFLEFVR APAYLLIGVW
AALQVVFAHI GPSFGMVAWW AHIGGFMFGL VYGVYVRAAI ARKLRKRHGF
|
|---|
| |