Gene Slin_6229 details

Gene Information

• Locus tag: Slin_6229
• ID: 8730012
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: -
• Start bp: 7551439
• End bp: 7554852
• Gene Length: 3414 bp
• Protein Length: 1137 aa
• Translation table: 11
• GC content: 56%
• Product: TonB-dependent receptor plug
• Protein accession: YP_003390987
• Protein GI: 284041057

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 34
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAATCGCT ACTCAATTTC ATTGAGCAGA GGACTCTTGT ACCTTCTCCT CCTGTTCAGC 
CCCCTTCTTT GTCGACAGGC GCAGGGCCGA ACGACGTTAT CCGTTAATCT CATCAAGATG 
GAGTTTCATA CGCCATATCT TGGAGATATG GCGTATGAAA CTCCATCCCG CGAGCAGGCT 
CACCTCATCT GGCTGACCGG AACGGTCACC GACGAACAAA ACCAGCCGAT TCCGGGCGTC 
AACATCGTTG AGAAGCAGAC CCGTAAAGGG ACCGTTACCG ATGCCACCGG ACAGTTCACG 
ATTGACGCCA ACCCCGGTGC TACGCTGGTG TTCTCGTCGG TGGGTTTCGC CACGCAGGAA 
GTCGTTGTTG GTTCGCAGCA AACGCTGAGC GTAACGCTAA AAGAGGACGT GAACCAGTTG 
AGCGAAGTAG TAGCTGTGGG CTATCAGACA CTCCGCAAGA GTGACGTTAC CGGAGCTATT 
GCCAACGTAA AAGCCCGCGA GCTGAATCTG TCGGCCCCCA CGGTTGGTCA GGCGCTGGTG 
GGTAAACTGG CGGGCGTACA GGTGTCGCAG GTGAGCGGTG CACCGTACGT GACGACCAAA 
ATCCGGGTGC GGGGTATCGG CTCCATCAAC GCCAGCTCCG ACCCGCTGTA CGTGATCGAC 
GGTTTCCCGG CGGGTAACGA CGTATTCATC AACCCAAACG ACATTGAAAG CATCGACGTA 
CTGAAAGATG CCGCGTCGGC CGCTATTTAC GGGTCCAGAG CGTCGGGCGG GGTGGTCCTC 
ATCACCACCA AACGCGGGAA AGACGGCAAA GGCAAGTTCG ATTATGAATA CCAGTACGGC 
ATCAATCAAC TCGCCAAAAA GGTAAAGTTG CTGGACGCAA ACGGCTTTGC GCAGCTGGTC 
ATCGACGGTC GCAACAACAC CTACCGCGAC CTCGTTCAGA ACAGCGGCAA GACCTGGACC 
GATGCCATGT TTTCGGACGA TAACGCCACT CGTATCGCCA AAGTGGGTAA CGCCGGTTCG 
GTCAGTATCC CGACGGATAT TTATGACTTC GCCAATCAAA AACTCATCAC CCCAAAATAC 
AATACCGACT GGCAGGACGA ACTGTACCGT AATGCGCCCA TGAGTCGGCA CAACCTCACG 
TTTTCGGGCG GCAGCAACGG CGTTCGCTAT CTGCTGAGTG GCGGCTACCA GAATCAGCAG 
GGCATCATCG TGAGCACGAA ACAGGAACGG GTGAACTTCC GGGCCAATGT CGATGCGGAC 
ATCAGCAAGA AGTTCAAAGT AAGCGGAAGC CTGTTTGTGA CCTCGACCAA CAACCGCGAA 
GTGCAGGAAG GCCGTTTCAA CCAGGGGCCT ATTCTGGGTG CGCTGATTTA TCCGCCTACC 
TTCCGGGCCT ACGACGACAA CGGCAATCCG GTGAAGAACG AAGTAGCGGC CCTGCAACCC 
GTTTATGGCT ATCAGACCGT TGAGAACCCG GTGGCACTGG CACAGGAAAC CAAGATAACC 
CGCAAAGGGC TGCGCGGCAC CTACAACGGA AATGCCAGTT ACGAGATCAT TCCGGGGCTG 
GTGGCCCGCG CCAATATTGG CTTGCAGACG TACAACGAAA AATACGATTA CTACCTGCCA 
ACCAGCCTGA GCAGCGGCAA CAACCCGCCC TATTCGCCCC AGGCCATTGC AGCCGCTACC 
GCAACGGCTC TCGTCGTAAA CACCCAGAAT ATCCTCGGCG AGTTTACGGC CACCTACAAC 
CGGCAGTTCG GCAAACACAA TCTGAACGGT CTGATCGGTT ATACAGCCCA GAAAACGAAC 
CTCGACCAGA TCAGCGTATC GGCGCAGGGT TTCCAGAACG ACGCCATCCC CGAAATCACG 
GCCAAAGGTG CCGATCCGAC CAACTTCTTC CTGAATACGA GTTCAACAAG CAGTAGTGTA 
GGATTCAGCG GCACGGGCAA GCAGGAAGAA ACGCTCCTCT CCTACCTGGC GCGGGCCGAG 
TACAACTACG ACAGCCGCTA TTTTTTGACG GCAGCCTTCC GGACCGACGG CTCATCACGT 
TTCGGACCGC TGAACCGCTG GGGTAACTTC CCGTCGATCT CCGGCGGCTG GACGATTTCC 
AACGAACCGT TCTACGCTGA TTTGGTAGGG TCGACATCGA CGCTGAAACT ACGGGGCAGC 
TGGGGACTCA CGGGGAATTA TAACGTGGGA AATTACAACT ACCTCCAGAC GATGGCCAGC 
CCAACGGGAG CTGTATTCGG CTCGGGAACG ATTCAGACGG CCTTTTATTC CGGACCGCTC 
AAAGATCAGA AACTTGGCTG GGAGTCGACC TCGCAGTTCA ACCTGGGGCT GGATGTCGGC 
CTGTTCAACA ACCGCCTGTT CCTGATTGCC AACGGCTACC TCAGTAACTC ATACAACCTG 
CTGTTCAACC AGCCCATTTC GGCCATCTCG GGCACTACGA GCATCCTGAC CAACCTGCGT 
GATTCTAAAA TTCAGAACAA AGGCATCGAA TTGCAGATCG ACGGGCGTGC CATTTCGACG 
CAGGATTTCA AGCTGAACCT CAGCGGTAAT ATCTCGCTGA ACCGCAATAA AGTGCTGAAC 
ATGGGCGGTG CCAACACCAT TCTGGTGGCG GGTGCCGAAC GGTCGTACAT CACCCACATC 
ACGCAGGAAG GCCAGCCGGT GGGTATGTTT TACGGCTTCA AGGTGATTGG CATGGTGCGC 
CAGAAAGACA TGGACAATAT TGCCGCCGAC AACGCAGCCT ACAATGCCTC TACGCAATCA 
TTCCCAACGG GTTACGTACT GAAAGGCCCC GCCCGCTCCA CCGCATCGAC CAACCCACTG 
CGCCCCGGCG ACCTGATTTT TCAGGATGTG AACGGCGATG GCGTGGTTTC CGATGCCGAC 
AAGCAGGTGA TTGGCAGCCC CTACCCGAAG TTTATCTATG GCTTCTCGGT AACGGCCAAC 
TACAAAGCGT TCGACGCCAA TGCGTCGTTC AACGGAACCT ACGGCAGTCA GGTGCTGGAT 
GGGCAGGATT ATTACCTGTT CAACATGGAA GGCTCGGGCA ACCAGTATTC CGTCGTGGCC 
GACCGGTACC GCTCTGAGGA TCAGCCGGGT AACGGGCAGG TGTATCGGGC ATCGCGGGGC 
GGCACCCAGA GCAACAGCAC CCGCCTGTCG ACTTTTTACC TGCAAAACGG CTCGTACCTG 
CGCTGCGCCA ACATCACGGT GGGCTACAAC CTACCCATTG CATCGCTGAC CAAAGCGAAA 
GTTAGCGCCC TGCGGCTGTA CGTCAACGTG AACAACGCCT TCACCCTCAC AAAGTACAAA 
GGCTATAACC CCGAAGTGGA TTACAACAAC GGTGCGAACC TGGCCCCCGG CGTCGATTAC 
GGCAAGTACC CGCTGGCGCG TGGCTACAAC ATAGGCGCAC GAATCACTTT TTAA 

 

Protein sequence

MNRYSISLSR GLLYLLLLFS PLLCRQAQGR TTLSVNLIKM EFHTPYLGDM AYETPSREQA 
HLIWLTGTVT DEQNQPIPGV NIVEKQTRKG TVTDATGQFT IDANPGATLV FSSVGFATQE 
VVVGSQQTLS VTLKEDVNQL SEVVAVGYQT LRKSDVTGAI ANVKARELNL SAPTVGQALV 
GKLAGVQVSQ VSGAPYVTTK IRVRGIGSIN ASSDPLYVID GFPAGNDVFI NPNDIESIDV 
LKDAASAAIY GSRASGGVVL ITTKRGKDGK GKFDYEYQYG INQLAKKVKL LDANGFAQLV 
IDGRNNTYRD LVQNSGKTWT DAMFSDDNAT RIAKVGNAGS VSIPTDIYDF ANQKLITPKY 
NTDWQDELYR NAPMSRHNLT FSGGSNGVRY LLSGGYQNQQ GIIVSTKQER VNFRANVDAD 
ISKKFKVSGS LFVTSTNNRE VQEGRFNQGP ILGALIYPPT FRAYDDNGNP VKNEVAALQP 
VYGYQTVENP VALAQETKIT RKGLRGTYNG NASYEIIPGL VARANIGLQT YNEKYDYYLP 
TSLSSGNNPP YSPQAIAAAT ATALVVNTQN ILGEFTATYN RQFGKHNLNG LIGYTAQKTN 
LDQISVSAQG FQNDAIPEIT AKGADPTNFF LNTSSTSSSV GFSGTGKQEE TLLSYLARAE 
YNYDSRYFLT AAFRTDGSSR FGPLNRWGNF PSISGGWTIS NEPFYADLVG STSTLKLRGS 
WGLTGNYNVG NYNYLQTMAS PTGAVFGSGT IQTAFYSGPL KDQKLGWEST SQFNLGLDVG 
LFNNRLFLIA NGYLSNSYNL LFNQPISAIS GTTSILTNLR DSKIQNKGIE LQIDGRAIST 
QDFKLNLSGN ISLNRNKVLN MGGANTILVA GAERSYITHI TQEGQPVGMF YGFKVIGMVR 
QKDMDNIAAD NAAYNASTQS FPTGYVLKGP ARSTASTNPL RPGDLIFQDV NGDGVVSDAD 
KQVIGSPYPK FIYGFSVTAN YKAFDANASF NGTYGSQVLD GQDYYLFNME GSGNQYSVVA 
DRYRSEDQPG NGQVYRASRG GTQSNSTRLS TFYLQNGSYL RCANITVGYN LPIASLTKAK 
VSALRLYVNV NNAFTLTKYK GYNPEVDYNN GANLAPGVDY GKYPLARGYN IGARITF