Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_6190 |
Symbol | |
ID | 8729973 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | - |
Start bp | 7497696 |
End bp | 7499618 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | |
Product | glycoside hydrolase family 2 sugar binding protein |
Protein accession | YP_003390948 |
Protein GI | 284041018 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGATTTA ATCAAACTCT ATTCACGCCA TTAGGGCTCC TGCTGCTGAC TACGGGCCTT GCCGTTGCGC AATCGCCCGC CCAGAATACG CCCCGAACGG CCCCCATCAT GAGCCGGTGG GAGAAGCAGC TAACGCCGGA GAACGCCTGG CGTGAATACC CGCGTCCGCA GATGGTCCGC AAACAATGGC AGAACCTGAA CGGTATGTGG GACTATGCCA TTACGGCCAA AACCGCTCCC CAGCCAACCG ATTTTTCGGG GCAGATTCTC GTACCCTTCA GCGTAGAGTC GACGGTGTCG AAAGTCAATA AATCACTCAC TGCCGACCAG CGTTTGTGGT ACCGTCGTAC CGTTAGCGTA CCCGCCGACT GGGCCGGACA ACGGGTGCTG CTGCACTTCG GCGCGGTAGA TTATGAATGC AGCCTGTGGG TCAATGGCGG GCTGGTGGGT TCGCATACCG GCGGTTTGGA TGCGTTTAGC TTCGACATTA CCGATTACCT GAAAGACGGC CAGAATCAAC TCGTACTGGG CGTACTCGAC CCTACCTCAA CGGGCGAACA GCCACGCGGC AAACAGTTGA TGAACCCGAA TGGCATCTGG TACACGCCCG TGTCGGGCAT CTGGCAAACG GTCTGGATGG AGCCGGTGCC GAAGCAGACC TACATCGAAG AGGTGAAACT CACCCCCGAA CTGGATTCGG GCCGGGTTCG GGTCGATGTG CTGCTCGACA AACCCGCTAA CAACTACACC ACTGCCATTC GATTGACGGC GATGGACGGC AACCGAACCG TTGCCACAAC GCTCGTTCGT GCCGGGCGGA CGGGGTACCT TTCGGTGAAA AACCCCAAAC TCTGGTCGCC CGATAGCCCG TTCCTGTATG ACTTTAAAGC CGAACTGGTT ACCGTAACGG ACCCTTTTGG CGATACGCCC CGCAATAAAC GCCCGCGTCA GGATGATGCC CTGAACAAGG CCTTCGCCGG TGCTACCGTA ACGGGCAATC CGCTCGATGT GGTAACCGGC TACTTTGCCA TGCGGAAAAT TGCGACGGGG AAAGGTCCGG TAGCCAACCA GCCGGTATTG CTGCTGAACA ACAAATTTGT TTTCCAGAAT GGCCCGCTCG ATCAGGGCTG GTGGCCCGGC AGTTTACTGA CGCCCCCTTC GGATGACGCG ATGGCCTTTG AAATTGACTT CCTGAAAAAG TCGGGCTTCA ACATGCTCCG TAAGCACATC AAAGTAGAGC CTGACCGCTA TTATTACCTG TGTGATAAGA TGGGCATGCT GGTTTGGCAG GATATGCCGT CGGGCTTTCT GGAAGGCCAG AACGAAGCCC CCGGCGATCA GACGGAGCCC ATTCGCCGGT CGAAGGCGAA AGAACAGTTT GAACTGGAGC TACGCCGGAT GATGAACCGC CTGCATAACC ACCCCAGCAT TGTTACCTGG GTGGTGCATA ACGAAGGCTG GGGCCAGTAC GACAACAAAC GCCTGGCCGA TTGGGTGAAA GCCCTCGACC CCAGCCGGAC CGTTAACGCC AGCAGCGGCT GGAACGACCT CGGCGCGGGC GATTTCTACG ATATTCATAC CTACGAGCCG GAACCCAACG CACCAGCACC CAAAACCGAC CGCGTGGTAG TTATTGGCGA ATTTGGCGGC ATCGGCTGGC CGGTACAGGG TCATCTCTGG AACCCAGAGA TGCGGAACTG GGGCTACCAG ACGTATCAAT CGGCCGACGA GGTGCTGAAA GCCTACCAGA AGAAATACGC CAAAATCGTG GAGTATTATC AGAAACAGGC GCTGTCGGCG GCAGTGTATA CCCAAACGAC GGACGTGGAA GGCGAAGTCA ACGGCCTGCT TACGTACGAC CGAGAGGTAA TCAAAATACC TATCGAAACG CTGAAAAAGA TTCACGCGCC TTTGTTTAAG TAA
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Protein sequence | MRFNQTLFTP LGLLLLTTGL AVAQSPAQNT PRTAPIMSRW EKQLTPENAW REYPRPQMVR KQWQNLNGMW DYAITAKTAP QPTDFSGQIL VPFSVESTVS KVNKSLTADQ RLWYRRTVSV PADWAGQRVL LHFGAVDYEC SLWVNGGLVG SHTGGLDAFS FDITDYLKDG QNQLVLGVLD PTSTGEQPRG KQLMNPNGIW YTPVSGIWQT VWMEPVPKQT YIEEVKLTPE LDSGRVRVDV LLDKPANNYT TAIRLTAMDG NRTVATTLVR AGRTGYLSVK NPKLWSPDSP FLYDFKAELV TVTDPFGDTP RNKRPRQDDA LNKAFAGATV TGNPLDVVTG YFAMRKIATG KGPVANQPVL LLNNKFVFQN GPLDQGWWPG SLLTPPSDDA MAFEIDFLKK SGFNMLRKHI KVEPDRYYYL CDKMGMLVWQ DMPSGFLEGQ NEAPGDQTEP IRRSKAKEQF ELELRRMMNR LHNHPSIVTW VVHNEGWGQY DNKRLADWVK ALDPSRTVNA SSGWNDLGAG DFYDIHTYEP EPNAPAPKTD RVVVIGEFGG IGWPVQGHLW NPEMRNWGYQ TYQSADEVLK AYQKKYAKIV EYYQKQALSA AVYTQTTDVE GEVNGLLTYD REVIKIPIET LKKIHAPLFK
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