Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_6109 |
Symbol | |
ID | 8729890 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | - |
Start bp | 7405274 |
End bp | 7407430 |
Gene Length | 2157 bp |
Protein Length | 718 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | |
Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein |
Protein accession | YP_003390870 |
Protein GI | 284040940 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.403763 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAAACT ACACTGTCGA CCAGCAGATT GCTATCATTT CGTGGGCGAT GACCTCCTCT CCCATGAACG TTCTTAACGA CGAATCGATC CCGGAATTTG AAGCCGCCCT CCAACGTGCC TTTACTGATG AGTCGGTGAA GGGCCTGATT ATTACCTCTG CCAAGCCTGA ATTCGTAGCC GGTGCCGACC TCAAAATGAT CCTGCGCGCT AACGATAAGC CTCCCGCCGA GATGCTGAAG GTCTCATCGG AGTTGAACCG GGTGTTCCGG AGCATCGAAA CGTCGGGCAA GCCTACCGTT GCCGCCATCA ACGGTACGGC GCTGGGGGGC GGTTACGAAA TCTGTCTGGC CTGCCACCAC CGCGTGGCTC TCAATAATCC AAAAACAGTT ATCGGTCTGG TTGAAGTAAC AATCGGTTTG CTTCCGGGCG CGGGGGGCAC CCAGCGGCTC CCCCGTATGA TTGGTATTCA GGCCGCTTTA CCGCTTATTC TGGAAGGTCG GAAAGTGAGC GTTCAGGAAG CCAAAAACCT CGGTATGATC GACGACATTG CCGACACACC CGACGAGATG ATGGCCCAAG CCCGCGCCTG GATCGACGCC AACGGAACGT CTGCCGGGCA AAAACCCCTG AAGCCCTGGG ACGAGATTGA TCGGAAGACG GGGAAGATCG TTGGGAAAGA CAACTTTAAG GTGCCGGGCG GCAACGTCCA AAGCCCCGTT GGTGCCCAGA CGTTTGCGGC TGGAACGGCC ATGCTCATGG ATAAAACCAA GGGTAACTAC CCCGCCCCCC TCGAAATCAT GGCTTGTGTG TACGAGGGTC TGCAAGTCAA TATCGACCGG GCACTAATGA TCGAAGCGCG GCATTTTGTG AAGGTGGCGA CCTCAAAAGT GGCGAAGAAC CTCATCCAGA CGATGTTTCT GGGTATGAAC GAAGCCAACA AGGGAGCCAG CCGTCCGAAA GATTACCCAA AAACTGACGT AAAGAAGCTG GGGATTCTCG GTGCGGGCAT GATGGGCGCG GGCATCGCTT ATGTATCCGC TCAGACCGGC ATTGAGGTTA TCCTGAAAGA CGTATCGGTC GAAGCGGCCG AAAAAGGCAA AGACTATTCC CGAAACCTGC TTAAAAAAGG CGTTGAACGC GGCAAAGTCG ACCCGGCGAA AGTAGACGGC ATCCTGAACC TGATCAAACC CACTGCCGAT GTGCAGGACT TGCAGGGTTG CGACCTCATT ATTGAAGCCG TCTTTGAAAA CCGGGAGTTG AAAGCGCAGG TAACCCGGGA AGCCGAACCC ATGCTGGCAG AGAACGGGCT GGGTGTCTTC GGTTCCAACA CTTCCACCCT GCCCATTAGC GGACTGGCGC AGGCATCGGG CAAGCCGGAG AACTTTATTG GCATTCACTT CTTCTCGCCC GTTGATAAGA TGATGCTTGT GGAGATTATC ATGGGCCAAC AAACGTCGGA TTATGCGCTG GCCGTCGCCA TCGATTTCAC CCGCAAGATT CGAAAAACAC CAATCGTTGT CAATGATGCC CGAGGCTTTT ACACCTCCCG CTGTTTCAGT ACGTATTCAT CGGAAGGAAT GGAATTACTG AAAGAGGGAG TCAACCCCAT TCTGATCGAG AATGCCGGAA AAGACGCCGG AATGCCCGTT GGCCCACTCG CCGTTACGGA CGAAGTTGCC CTGGATCTGG TCTATAAAAT TACCGGACAG GGAATTAAAG ACGGGGCCGT TCGCGAAGAC GACACCAGTT ACCAGGTTGC CAGGACGTTC GTTGAACTGG GCCGAACCGG TAAAAAGGCC AAAGCCGGGT TTTACGATTA TCAGGATGAC CGAAGCAAGA AGTTATGGCC GGGTTTGCAG GACCTGTTCC CACAGGCCGA GCAGCAGCCT ACACTCGATG AAGTAAAAAC GCGTTTGCTC TACCGGCAGG CCATCGAAGC TGTCCGCTGC TTCGAAGAAA ACGTGGTACG GACAAAGCTA GATGCTGATC TCGGTTCCAT TCTGGCCTGG GGTTTCCCGG CTTATACGGG TGGGGCCGTA TCGTTTGTGG ATTTCGTGGG TGTCGATACG TTCGTTAAAA CGCTGGACCG CCTAGCCGAT CAGTACGGTG ATCGGTTCCT CCCAACGGCG GCCCTGCGCG AACGGGCACA AGTATAA
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Protein sequence | MINYTVDQQI AIISWAMTSS PMNVLNDESI PEFEAALQRA FTDESVKGLI ITSAKPEFVA GADLKMILRA NDKPPAEMLK VSSELNRVFR SIETSGKPTV AAINGTALGG GYEICLACHH RVALNNPKTV IGLVEVTIGL LPGAGGTQRL PRMIGIQAAL PLILEGRKVS VQEAKNLGMI DDIADTPDEM MAQARAWIDA NGTSAGQKPL KPWDEIDRKT GKIVGKDNFK VPGGNVQSPV GAQTFAAGTA MLMDKTKGNY PAPLEIMACV YEGLQVNIDR ALMIEARHFV KVATSKVAKN LIQTMFLGMN EANKGASRPK DYPKTDVKKL GILGAGMMGA GIAYVSAQTG IEVILKDVSV EAAEKGKDYS RNLLKKGVER GKVDPAKVDG ILNLIKPTAD VQDLQGCDLI IEAVFENREL KAQVTREAEP MLAENGLGVF GSNTSTLPIS GLAQASGKPE NFIGIHFFSP VDKMMLVEII MGQQTSDYAL AVAIDFTRKI RKTPIVVNDA RGFYTSRCFS TYSSEGMELL KEGVNPILIE NAGKDAGMPV GPLAVTDEVA LDLVYKITGQ GIKDGAVRED DTSYQVARTF VELGRTGKKA KAGFYDYQDD RSKKLWPGLQ DLFPQAEQQP TLDEVKTRLL YRQAIEAVRC FEENVVRTKL DADLGSILAW GFPAYTGGAV SFVDFVGVDT FVKTLDRLAD QYGDRFLPTA ALRERAQV
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