Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_4847 |
Symbol | |
ID | 8728611 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 5899854 |
End bp | 5903513 |
Gene Length | 3660 bp |
Protein Length | 1219 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | |
Product | putative restriction enzyme |
Protein accession | YP_003389624 |
Protein GI | 284039694 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000521229 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.767237 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATACCC GCCGACTTAA ACCCTTTGCC CAGCAATGCC GCCAGCGATT AATGCAGGGC ATTGCCGACC GACTAAATTA CTGGGGCTTT GTGGCCACCA GCCGCCAACC CGTCGAAACG CTCGAAAAAC TCGACGGCGG TTACCTCTTC CGGGGGCAGG TTTTTGATGA AACCGACGTC CCTCGTCGCT GGCAACTGCT GGCTGGCGCG GTACAGACGC ATGGTTTTGC GCATGTGCAG GAAACCGTGG CCTATACGTG GTTTAACCGG CTGATGGCAC TCAAGATTTT GGCGCATAAT AACTACCAGC CCGATGTGCT GAGTTTTACT CGTCCGGATA CACCAACACC CCAGTTGCTT GATGAAGCCC GGCGCGCCCA GCCGCCTTAC CTCTCCGAGC AACTGTATCG GATACTGCGG CCCCTGTTAA CGGACTATAC CCGCGAAACC GATGCCTTTG CCCGGCTGCT AACGGCCTAC TGCGTGCAGC ACCCCGTACT GCACCGGCTC TTCGATGTGG CCGACGATGT ATCGACCTTG TTGTTGCCCG CCGATATGCT GGGCGAAAGC GGTGTGCTGG CATTTATAAA TAACAGTACG GCCATCAGTG AAGCTGATTT TAAGCAGGTC GAGCTGATTG GCTGGCTCTA CCAGTTCTAC ATTGCCGACC GAAAAGACGA GGTTTTTGCC GGGTTTAAAA AAGGGTTGAA AGCAGGCCCT GACGATATTC CGGCCGCGAC CCAGATTTTT ACGCCCCGCT GGATCGTCTC CTATCTGGTC GAAAATACCC TGGGGCGGCT CTACCTTGAC CAAAACCCTG ACTCATCGCT AGGCGAGACG ATGCGGTATT TGGTCAAAAC CGAAAAGAAG CCAACTACTG TTGCTGACGA AACCGGTCAA AGCAGGGAGG CTGCTCCAAC GACTCTTTCC TTCAACGAGG GTGCCTTGCC AATGCAGGCC GATGTCTCGG TGGCGTCTCT GCGCCTTATT GACCCCGCTT GTGGTTCGGG CCACATTCTG GTTACGGCCT TCGACTTGCT CATGCGCATC TACAATGAAG AAGGCTACAC CAAACGACAG GCTGTGACCG CCATCCTGAA CAGCCACCTT GTAGGCCTTG ACCTCGACGA ACGAGCCGCC CAACTCAGCC GCTTTGCCCT GCTGCTCAAA GCCAGCCAGT ATTGGCCCGG TGTGTGGGAT ACCGATATTA TCCCGGACGT TTGGGCTATG CCCGATCCCT GGATGCCCAC CGATACAGAC CTGTTGAGCT TTCTTGGTAC AGATGGGAGA GAGTTTCTGG CCGAATTGCA CACTGCCCTG CGGCTTATGC AACAGAGTCA GAACCTTGGC TCGGTTATGC GGCCTAACCT GTCCCGAGCG GGCCGGACGC ACTTGCGTAA TCGACTATTA ATATACGAAG CACAGTCCGA CGATGCAATC GACATTTTTG CAGGCACGAA TCGCCAGCAT CTACGCCACT ACATACATGT TTTGCTGATC TTGACTGATC ACTATGCGGC TGTGGCAGCT AACCCGCCGT ATATCAATTC AGGTAGTATG GAAGCAGTAT TGAAAGGGTA CATTGAAAAA CATTACTACC GATCAAAAAT CAACTTATCG TTATCATTTA TGGAGAAATG CTGCGATATG TGTCAGAGTA AAGGAATTTG GGGGCTAATA AATCAAGATT CATGGTTACT CAAAACTTCG TCGGTCGAAT TACGAAAATT GCTATTGGAT ACAAACGCAG TAGAGTCTGT TTTGCATTTA GGGCCAAATG CATTTGATGA ATTGGGTGGT GAAGTAGTAC AAACAACGGC AGCCACCTTT CGAAAATCAG AATCGCATCC TTCGTCAAGT GGTATATACT ATGACTTGAC AATGTTTGGG TCAAGCGCAA AAAAAGAAGG TGCGTTTTTA GCCGGTGTCA ATCAATTCAG TAAAGTCATG CAGCAGAGCT TTGCTGAATT GCCCGGAAAT GCAATATCAT ACAGGATGAG GCCAGGGTTA AGCACTATAT TTAAGACAGA GGAAAAACTT GGGGATTATG CTGATGTCAA ACAAGGATTA TCTACCGCTG ACAATGACCG CTTTCTGAAA CTTTGGCATG AGATAAATAT TCATAAAATC AGTTTACAAG GTAAAGCGGA AAGAAAATGG GTTCCTTGTA CAAAAGGGGG CTCATTTCAA AAGTGGTATG GAAATAATGA GTATGTGATT AACTGGGAAA ATAATGGTTA TGAGTTAAAG CACTTCTTTG ACAAAAACAC CAAAAAACTG CGCTCAGCAA TTAGAAATGA AATATACTAT TTTCGAAAGG GTATCACTTG GTCAGTAATG AGCAGTGGTA GTAACGGGTT CAGAATTCTA CCAGAAGGGT TTATTTTTGA GCACAAAGGC TCTGCTTGTT TTGCTAAGGA TGAATCCGAT CTGGAGTCAA TAATTGGTTT CTTAAACTCC CCGGTTGCTT ATAGTCTCAA TCAGGCTCTC TCATCAGGCA ATGAAATTAA AGAGGGAATT CTTCAAAAAT TGCCGTACAA AGAGCCATAT AATGCAACTA AGATTAGCCC AATAGTCCAA TCCTGCACCA ACATCGCCCG CTTAGATTGG GATAGCCGAG AAACGAGTTG GGATTTTGCC GAAAATCCAC TGGTTGCCAT TCAGCGGCAG GCATCGGGTT CATTACGGCA GGCTTACGAA ACCTGGGCCG CGCAGGTAGC CGGGCAGTTT GTTGAGCTGC ATCGGCATGA GGAGCGGCTA AACCATATCT TCATTGACTT GTATGGATTA CAGGATGAGT TAACGCCCGA AGTATCGCCC CGCAATATTA CCCTCCTGCC CGAGGAGCTG GACAAAAACC AGCTAATGGC GGAAGCTGAA AGAGAAGACA ACTGGCTTAT AAACCCAACA GGTGTTGTAA CTAGCGCCAT CCGGCGCGAT GTAGTGGCTC GGCAGTTTAT CAGCTATGCC GTGGGCTTGC TCATGGGCCG CTACCGGCTC GACAGCCCTG GTCTACACAT CGCCCACCCA AATGCCACGC CCGAAGAACT GGCAGACTAT ACCGTGACGC GAACGGAAAA CGGAATACCA AAAACCGAGC CCTTCACCAT CGACCCCGAT GGCATTTTGC CAATACTGGG TGAGGAAGGT GGTTTTCCTG ATGACCTGGG ACGTGGGCTT CGGCAGATAC TCGAATTGAT TTGGGGTGGT CACCAACTCA CCGACACGGT AAGCTGGCTG GAAGAGTCGC TTGGGCAATC GCTCGACAAG TATCTGACTT TTAATTTTTG GGGCGATCAT TGCCGACTCT ACCAGAAACG ACCCATTTAC TGGTTGTTTT CATCACCTAA GGGCGCATTT AAGGCCCTAG TTTATCTGCA CCGCATAAAT GGATTCACGG TATCCACACT CCGTAACAAG TATTTGTTGC CATATATTGA CCGGCTCAGT CGCCAGATCG ACCACTTTAA TTCAACCAAA AGTCAACTCG GTACCGCCGA AAATCGACGC ATTGAAACCT TACGCAAGGC ATATGAAGAG TGCCGCCAGT ATGATTTGCT ATTACGCGAT GCCGCTGACC GCCAGTTTGT GCCCGATCTC GATGCTGGTG TGACGCGTAA CTATGCGCAG TTGAGCAAGG TGCTGGCTAT CATTAAATAG
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Protein sequence | MDTRRLKPFA QQCRQRLMQG IADRLNYWGF VATSRQPVET LEKLDGGYLF RGQVFDETDV PRRWQLLAGA VQTHGFAHVQ ETVAYTWFNR LMALKILAHN NYQPDVLSFT RPDTPTPQLL DEARRAQPPY LSEQLYRILR PLLTDYTRET DAFARLLTAY CVQHPVLHRL FDVADDVSTL LLPADMLGES GVLAFINNST AISEADFKQV ELIGWLYQFY IADRKDEVFA GFKKGLKAGP DDIPAATQIF TPRWIVSYLV ENTLGRLYLD QNPDSSLGET MRYLVKTEKK PTTVADETGQ SREAAPTTLS FNEGALPMQA DVSVASLRLI DPACGSGHIL VTAFDLLMRI YNEEGYTKRQ AVTAILNSHL VGLDLDERAA QLSRFALLLK ASQYWPGVWD TDIIPDVWAM PDPWMPTDTD LLSFLGTDGR EFLAELHTAL RLMQQSQNLG SVMRPNLSRA GRTHLRNRLL IYEAQSDDAI DIFAGTNRQH LRHYIHVLLI LTDHYAAVAA NPPYINSGSM EAVLKGYIEK HYYRSKINLS LSFMEKCCDM CQSKGIWGLI NQDSWLLKTS SVELRKLLLD TNAVESVLHL GPNAFDELGG EVVQTTAATF RKSESHPSSS GIYYDLTMFG SSAKKEGAFL AGVNQFSKVM QQSFAELPGN AISYRMRPGL STIFKTEEKL GDYADVKQGL STADNDRFLK LWHEINIHKI SLQGKAERKW VPCTKGGSFQ KWYGNNEYVI NWENNGYELK HFFDKNTKKL RSAIRNEIYY FRKGITWSVM SSGSNGFRIL PEGFIFEHKG SACFAKDESD LESIIGFLNS PVAYSLNQAL SSGNEIKEGI LQKLPYKEPY NATKISPIVQ SCTNIARLDW DSRETSWDFA ENPLVAIQRQ ASGSLRQAYE TWAAQVAGQF VELHRHEERL NHIFIDLYGL QDELTPEVSP RNITLLPEEL DKNQLMAEAE REDNWLINPT GVVTSAIRRD VVARQFISYA VGLLMGRYRL DSPGLHIAHP NATPEELADY TVTRTENGIP KTEPFTIDPD GILPILGEEG GFPDDLGRGL RQILELIWGG HQLTDTVSWL EESLGQSLDK YLTFNFWGDH CRLYQKRPIY WLFSSPKGAF KALVYLHRIN GFTVSTLRNK YLLPYIDRLS RQIDHFNSTK SQLGTAENRR IETLRKAYEE CRQYDLLLRD AADRQFVPDL DAGVTRNYAQ LSKVLAIIK
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