| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_4493 |
|---|
| Symbol | |
|---|
| ID | 8728257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 5444895 |
|---|
| End bp | 5445998 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_003389272 |
|---|
| Protein GI | 284039342 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.612872 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAC TATTAATTAT TGGAGCGGTA GCTGCCCTGA TTGCGCTGAT TGCTTTCCGA
TTGATCAACA ACAAAAAAGA TATTGAAGCG GCCAAAACCT CGTCCGTCCA ATTTCAGACG
ACGCCCGTTG TCGATGTGTC GCCCGTTTCC TTTGAGCGTC TGGACCAAAG CCTATCGCTG
TTGGGAACCG TAGCGGCCCA GAATGAAGGT GATATTATTG CCGAAACGCG GGGAAAACTC
CAGAGCTTTA AACTGGTGCT GGGTACCTAC GTCAAAAAAG GCCAGCAGGT GGGGTACGTT
CAGGATGAAG TTCAGGGCAT TGTGGTCCAG AACAATCACA CGGCAGTCGA AAACGCCAAA
CGCGAAATGG AGCGTTACGA GCGTTTGCTT AAAGGCGGTG CCGTAACGCA GGAGACCTAT
CAGAAATACA AGGACCAATA CACCACGGCG CTGCTCAACG AAAAGCAACA GCAACGGGTA
CTGGGCAATG GAGCCGTTGT TGCACCCATC AGCGGGTACG TGTATGATAA AAAGGTTGAA
AACGGAGAGT ACGTAGCCGT GGGTGCGGTG CTGGCATCGG TCATCAACCT TCAGGATTTG
AAACTCGTCG TTAACGTGCC GGAGCAGGCC GTTTACCAGC TTAAACTCGG CGATAAAGCC
CGTATTACGG CTCAGGCGTT TCCGGGTGTG ACATTCTCCG GAACGGTGCA TTACATCAGC
CCGAAAGGCG ATGCGCTGCA CAACTACCCG GTTGAACTTT ACCTGACAAA CAACAGCAAA
AACCAGCTTA AAGCAGGTAC ACTTGCCAAC GCCAATTTCA CCTTCAAACA GGGCATTGCC
GGTTTGTTCA TTCCGCGCCG GGCATTGGTT GGCGGTGCGG ATAGCGCCAG CGTTTACGTG
GTCCAGAACA ACGTAGCCCG CTTACGCAAA ATCCGACTTG GCTACGATAA CGGCGACCAG
TATCAGGTTC TGGAAGGACT GAAGCAGGGC GAACCCGTAG TGGTTAATGG TCAGCTGAAT
TTGAGTAACG GTGCTAAAGT AACGGTCAGC GCAGGCGCTG CCGCTGCGAG TAAACCAGAC
ACGTCAGTAG CGGTTAATCC GTAA
|
|---|
| Protein sequence | MKRLLIIGAV AALIALIAFR LINNKKDIEA AKTSSVQFQT TPVVDVSPVS FERLDQSLSL
LGTVAAQNEG DIIAETRGKL QSFKLVLGTY VKKGQQVGYV QDEVQGIVVQ NNHTAVENAK
REMERYERLL KGGAVTQETY QKYKDQYTTA LLNEKQQQRV LGNGAVVAPI SGYVYDKKVE
NGEYVAVGAV LASVINLQDL KLVVNVPEQA VYQLKLGDKA RITAQAFPGV TFSGTVHYIS
PKGDALHNYP VELYLTNNSK NQLKAGTLAN ANFTFKQGIA GLFIPRRALV GGADSASVYV
VQNNVARLRK IRLGYDNGDQ YQVLEGLKQG EPVVVNGQLN LSNGAKVTVS AGAAAASKPD
TSVAVNP
|
|---|
| |