Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_4406 |
Symbol | |
ID | 8728166 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 5340769 |
End bp | 5342661 |
Gene Length | 1893 bp |
Protein Length | 630 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | |
Product | ABC transporter related protein |
Protein accession | YP_003389186 |
Protein GI | 284039256 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.336146 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTATC TCTCAGCCGA AAATTTATCA AAAACCTACG GCGACCGTAC TCTGTTTAAG AACCTCACGT TTGGCATTAA CCGGGGTGAT AAAGTAGCTA TTGTTGGTGC CAATGGCTCC GGCAAAACAA CGTTACTGTC CATTCTGGCT GGCGCCATGC CGCCCGATGC GGGCCTTGTG AGTCACCGTA AAGACATCAG CATCGGCTAC CTCGACCAGC AGCCCGACTT CAATGATGCC CTGACCGTGA TGGAAGTTGT GCTGGCGGGC GAAAGCGCTC AGCTCGATGC TGTGCGGGCT TATGAGCATG CGCTGGCTCA CGAAGACAAT AAAGGTCTCG AACAAGCCAT GGCCGACATG GAGAAACTCG AAGCCTGGGA TTACGAAGCG CAGATCCGGC AAATCCTGGG TGAATTAGGC ATCCAGGATT TCGAGCAAAT TGTGGGCTCG CTATCCGGTG GCCAGCGCAA ACGCGTTGCG CTGGCGCGGG TACTCATTCA AAACCCCGAT CTGATCATTC TGGATGAGCC GACCAACCAC CTCGATCTGG AAGCTATCGA ATACCTCGAA AATTACCTGA ACACAAACAA CGGTACACTG CTGATGGTCT CGCACGACCG GTATTTTCTC GACCGGGTCT GCAATCAGAT TGCCGAGATG GACAACGGGC AGTTGTACAC GTACAAGGGT AATTACGCGT ATTTTCTGGA GAAAAAAGAC GAGCGGGAAG CAGCCGCAGC CTCCGAACTG ACCAAAGACC GCAACACCTT CCGGCGGGAA CTGGAATGGA TGCGTCGGCA ACCCAAAGCG CGGGGTACCA AAGCGCAGTA CCGCATTGAT GCCTTTGAAG ACCTCAAAGA AAAGACCAGC GGCAAGAAGA ACGACGGCGA TCTGGACCTG AATCTGCGCA TGGCCCGGCT GGGCAGCAAA ATTCTGGAAG TCGAGAATCT GAGCAAACGC TTCGGCGAGA AAGTACTGCT CGACCATTTT ACGTACACCT TCAAACGCCC CGACCGCGTT GGGTTGATCG GCAAGAACGG CATGGGTAAA ACCACGCTGA TGAACATGCT GACGGGGCAA CTTCGGCCCG ACTCCGGTAA GATCAGCACG GGGGGCACCG TTAAGTTTGG CTACTACACT CAAACCGAAC TGGACCTCCC CGAAAACCAG CGTGTTATTG ACGTGGTGCA GGATGTGGCC GAAGTGATGA AACTGGCCAA CGGCGATACC ATCACGGCCA CGCAGCTCCT GAGCCGGTTT CTGTTCGACC GATCCAAGCA GTATGATTTT GTTGCCAAAC TGAGCGGGGG CGAAAAACGG CGTCTGCAAC TTTTACTGGT GCTGGTTCAA AACCCGAACT TCCTGATTCT GGATGAGCCT ACCAATGATC TCGATATTAC CACGCTGAAC GTATTGGAGG ACTTTTTAAT TAACTTCCCC GGCTGTGTGC TCATTGTTAC GCACGACCGG TACTTCATGG ATCGGCTGGT TGAGCACGTG TTTGTGATGG AGGGCGAGGG AAAAGTGCGG GATTATCCGG GCAACTACAC AGATTACCGG GAGTGGCGGG ATTCGCAACC CAAAGCTAAT GCACGGCCGG GTAAACCAGC AACGGCCGAT GTTAAGAGCC AGGCAACGGC TCCCGTCGTT TCGTCGGTAC CGACGAATCA GAACGGAGCA AAACGTAAGC TATCTTTCAA GGAAATTCGG GAGTACGAAA CACTTGAAAA AGATATTGAG TCGCTGGAGC AACGGAAAAC TGAGATTGTG AGTCTCCTCA ACACGGGTGG CCACCATGAA CAGTTGATAG CGTGGTCGCG GGAGATCGAA CAGATTGACC AGACCATTGC CGAGAAATCA GACCGCTGGC TGGAGCTGGC GGAGTATATT TAA
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Protein sequence | MNYLSAENLS KTYGDRTLFK NLTFGINRGD KVAIVGANGS GKTTLLSILA GAMPPDAGLV SHRKDISIGY LDQQPDFNDA LTVMEVVLAG ESAQLDAVRA YEHALAHEDN KGLEQAMADM EKLEAWDYEA QIRQILGELG IQDFEQIVGS LSGGQRKRVA LARVLIQNPD LIILDEPTNH LDLEAIEYLE NYLNTNNGTL LMVSHDRYFL DRVCNQIAEM DNGQLYTYKG NYAYFLEKKD EREAAAASEL TKDRNTFRRE LEWMRRQPKA RGTKAQYRID AFEDLKEKTS GKKNDGDLDL NLRMARLGSK ILEVENLSKR FGEKVLLDHF TYTFKRPDRV GLIGKNGMGK TTLMNMLTGQ LRPDSGKIST GGTVKFGYYT QTELDLPENQ RVIDVVQDVA EVMKLANGDT ITATQLLSRF LFDRSKQYDF VAKLSGGEKR RLQLLLVLVQ NPNFLILDEP TNDLDITTLN VLEDFLINFP GCVLIVTHDR YFMDRLVEHV FVMEGEGKVR DYPGNYTDYR EWRDSQPKAN ARPGKPATAD VKSQATAPVV SSVPTNQNGA KRKLSFKEIR EYETLEKDIE SLEQRKTEIV SLLNTGGHHE QLIAWSREIE QIDQTIAEKS DRWLELAEYI
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