Gene Slin_3838 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_3838 
Symbol 
ID8727596 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp4606191 
End bp4607009 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content48% 
IMG OID 
ProductIntegrase catalytic region 
Protein accessionYP_003388627 
Protein GI284038697 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAACT ATCGCGTTTC AGCACGTCGT GCATGCGCTG TGATTCAGTT CCGTCGATCC 
TCCTTGCAGT TTAAATCTCG TCGTCGAGAT GACTCCGTGA TCCGGAAACG AATCAAAGAA
ATTGCCCAGG TAAGGGTTCG GTACGGTTAT CAGCGGATTT ATGTGCTGCT GCGCCGGGAG
GGTTGGCGTG ACAACCACAA AAGGGTGTAT AGGGTGTATT GTGAAGAAGG ATTGCATCTC
AGAAGCAAGC GCCCCCGTCG TAATCGAGCC GCTGCCCACC GGTTAGAGCG CCCCCAACTC
TCCAGTATTC ATCAGTGCTG GAGCATGGAT TTTGTGGCTG ACCAGCTTTT TGATGGCCGA
AAAATCCGGG CGTTAACTAT AGTTGATAAT TATAGTCGCC AATGCGTGGC CATTCATGTC
GGCCAATCGT TGAAAGGGGA TGATGTAGTA GCAGTGATGA ATCAACTAAA AGAGATACAT
TTGGCTATGC CCGAGCGGAT TCAAGTAGAT AATGGCAGTG AATTTATATC GAAAGCTCTC
GATTTGTGGG CTTATGACAA CGGGGTAACA TTAGACTTTT CCAGACCTGG CAAGCCAACT
GATAACCCGT TTATTGAGTC GTTCAATGGC AGTTTTCGGG ACGAGTGCTT GAACGCTCAC
TGGTTCTTGT CGTTGGAAGA TGCTCGTGAA AAAATCGAGG CTTGGCGTCA AGAATATAAT
TCCTTTCGAC CCCATAGTTC GCTCGGCGGA CGAACACCAG ATGAGGCCGG AATGGGTATT
GAAAGAAGAA CAAATGAACG TCCGGTCCTC AATCTTTGA
 
Protein sequence
MENYRVSARR ACAVIQFRRS SLQFKSRRRD DSVIRKRIKE IAQVRVRYGY QRIYVLLRRE 
GWRDNHKRVY RVYCEEGLHL RSKRPRRNRA AAHRLERPQL SSIHQCWSMD FVADQLFDGR
KIRALTIVDN YSRQCVAIHV GQSLKGDDVV AVMNQLKEIH LAMPERIQVD NGSEFISKAL
DLWAYDNGVT LDFSRPGKPT DNPFIESFNG SFRDECLNAH WFLSLEDARE KIEAWRQEYN
SFRPHSSLGG RTPDEAGMGI ERRTNERPVL NL