Gene Slin_3440 details

Gene Information

• Locus tag: Slin_3440
• ID: 8727193
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: +
• Start bp: 4167848
• End bp: 4171279
• Gene Length: 3432 bp
• Protein Length: 1143 aa
• Translation table: 11
• GC content: 53%
• Product: PKD domain containing protein
• Protein accession: YP_003388247
• Protein GI: 284038317

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 45
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAAAACA CACGGCTTCC CTCCCGCGCC TTGCTGCTGG CGGGTTTGCT GGCAGCGGCT 
GTACCGGGCA TAACCGCCGA GGCACAAACG GCTGCCAAAC GTACCGCAGT TGCCAGACCC 
GCTATGAAAG CGGCAGAAAG CGCTGTGGCC TTAAACCGAG TACTGGTCTT TTCGAGGACA 
AAAGGCTACC GCCACGGCTC TATCCCCGCT GGTAAATTGG CCATCATGAA GCTGGGTAAG 
GAAAACGGAT TTGCGGTCGA TACAACCGAA GATGCCAGCA AGTTTACCGA AGCGAACCTT 
AAACAGTACA GCGCTGTCAT CTGGCTCAGC ACCACCGGCG ATGTGCTCGA CGATGCCCAG 
CAGGCAGCTT TCGAACGCTA CATTCAGGCG GGTGGCGGTT ATGTGGGTAT CCACGCAGCT 
GCCGACACCG AGTACGACTG GCCCTGGTAC AACAAACTGG CGGGTGCTTA CTTCCTGCAA 
CACCCCAAAC AGCAGAACGC CGAAATCGAG ATCGTCGATA AAAACCACCC ATCCACCAAA 
ATGCTGCCCG ACCGCTGGAA GCGCTGGGAT GAGTGGTACA GCTACAAGAG CATCCAGCCT 
GACCTGAAGG TTTTGGGTAA GCTGGACGAA AAAACCTATG AAGGTGGCAA AAACGGCGAC 
AATCACCCGT TTATCTGGCA CCATGATTTC GATGGTGGCA AGGCGTTCTA CACGGGCGGT 
GGCCACACCG ACGAGTCATA TGCCGACCCA CTGTTCTTAC AGCATATTCT GGGTGGTATC 
AAATCGGTTA TGGCAACCAG CCTGAAATTC GGACAGGCGA AAACGCTGCC CTTTCCGGAA 
GAAAACCGCT TCGAACGTCA AATCCTGACC GCTGGCCTGG ACGAACCAAC CGAACTGGTT 
GTTCTTGACA ACGGTAAAGT GCTTTTTGCA GAACGGAAGG GTGCCCTAAA ACTCTACGAC 
CCAAAGAAGA ACTCGGTTAA AGTGGTGGCT AACTTTCCGG TATTCACCAA GTTTGAATAC 
GGACTGATGG GACTGAATGT TGATCCCAAC TTTAAGCAGA ACAAGTGGGT GTATGCATTC 
TATTCACCTA TTACGGGTAA AACGGTAGCC GATACGGCCC AGCACCTGTC TCGCTTCGTA 
TATGACGACG TTCGGGATAC GTTGCTGATG AACACCGAAA AAGTGCTGCT GACGGTTCCC 
GTTAAGCGTG ATGGCTGCTG CCATACCGGC GGCTCCATTG CGTGGGACCG CAAAGGCAAC 
CTGTACCTGT CGACGGGTGA TGATACCAAC CCGTTTAACT CTAACGGCTT TGCGCCTATC 
GACGAACGGC CGGGTCGCAG TGGCTGGGAT GCCCGTTTAA CATCGAGCAA CACCAATGAT 
CTGCGTGGTA AAATCATGCG TATTCATCCC GAGGCCGATG GTACCTATAC CATTCCCGAA 
GGCAACCTGT TCCCCAAAGG AACGCCCAAA ACCCGCCCCG AGATTTATGT GATGGGTAAC 
CGGAACCCTT ACCGGATTTC GGTCGATCAG CGCACTGGAT TCCTGTACTG GGGTGAAGTA 
GGTCCTGATG CCGGTGAGAA CAGCGAAAAA TACGGTCCCC GCGGCCACGA TGAAGTAAAC 
CAGGCCCGAA AGGCTGGTTA TTATGGCTGG CCCCTCTTTG TAGCCGACAA TCGGCCGTAC 
AACACCCGCA CGTTTGCCGA CAGCACGACA GGCCCCCTGT TCGATCCGCA GAAGCCAATC 
AATAACTCAC CCAACAACAC GGGTTTAACG GAGTTGCCTC CAGCGCAGAA AGCCTACATC 
TATTACCCGT ATGCCGACTC GCCCGAATTT GGCCCTATCG TTGGTAAAGG CGGTCGGAAT 
GCGATGGGTG GCCCGGTTTA TTATTACGAC GACTATGCTG AATCGTCCGT AAAATTCCCC 
CGTCATTACG ATGGTAAATT CTTTGCCTAC GACTGGATTC GCGACTGGAT TCATCCGGTT 
ACAATGAAAG AAAACGGCGA TTTCGTGAAG ATGGAGACCT TTATGCCGAG CACGCCTTTC 
TCGCACGTGA TCGATATGCA GTTTGCTAAC GACGGATCGC TATACACGCT CGAATATGGC 
CAGCGGTGGT TTGCCGCTAA CCCCGACGCC CGCCTGTCGC GCATTACCTA CAATGCCGGT 
AACCGGAAGC CCGTTGCCAT AGCCAGCGCC AGCAAAACTG TTGGTTCCGC TCCATTGACC 
GTGAAATTCG ATAGCAAAGG ATCGATGGAT TACGACGGCG ATGCGCTGAA GTACTCCTGG 
TCGTTCGGAA ATGGAATGCC CAAACAAACG GCCGCCAACC CAACGGTAAC GTTCAGTAAG 
CCGGGGACCT ATCCCGCTAC GCTGACCATT ACCGATGCAG CCGGTAATGT CGCTTCGAGA 
ACGATGGAAA TTAAAGTCGG TAATGCCGAG CCCAAAGTTG AAGTAGCCGT AGCCGGGAAC 
AAAACCTTTT ACTTCCCCGA CAAACCGGTG AAATACGCCG TAAACGTTGT CGATAAGGAA 
GATGGAACGT TGAAGAAAGG CATTAGTCCG GACGATGTGA CCATGACCAT TGACTACCTC 
GAAGGCTTCG ACAAAACAAT GCTGGCGCAA GGTCACCAGG CCAATCTGGG CTTCTCGACC 
GGCAAACGCC TGATTGAGCT GAGTGATTGT AAAGCTTGCC ACGCCATCGA TAAAAAATCC 
ATTGGACCTG CTTACATCGA CGTAGCGAAA AAATACAAAG GCGTTGCTCA GATTGAAAGC 
AAACTGGTTC GCAAAGTGAT CAACGGTGGT GGTGGTGTTT GGGGCGAACA GGCTATGAGC 
GCTCACCCGC AGTTGAAAGA AAGTGAAGTG GCCGATATGG TAGGTTATAT TCTTTCGCTG 
GCCGATGAGA AGAAAATAAA CCGCCAGCCA CTGGCCGGTG ATTATGTACC AGCTCAGCAG 
AAGAAAGCGG GCTCTTATAT CCTGACCGCC AGCTATACCG ACCGTGGGAA TGGCGTAATT 
GGCCCCCTGA CCAGTTCTAC ATCACTAGCC TTACGCTCGC CCATGGTGAA AGCGGTTTCG 
GCCGATGGTA AGCAGGATAT TTCTCAATTC GATATGCCTA AAGTAGGACC AGCGGCTATT 
GGAACAAAAT CGGGAAGCTA TCTGGCGTTT AACGATATTG ACCTGACAGG CATTCAAAGC 
ATTTCGCCAA CCGTATTTGC CTCAAACAAT CAGGTTGCGG GTGGTAAACT CGAAGCCCGG 
CTCGATTCCC CAACTGGTAC GCTGCTGGGA GAAGCTGAGG TTAAGCAAGG CACCCAAGGA 
GCCGTTAATC TGCCTTTCCG CCAGCCGGTT TCGGGTATTC ATAAGCTCTA TCTGGTTTTC 
GTGAATCCCG AAGCGAAACA GAAACCACTG TTTGCTGTAG ATCAGGTTCA GTTCTCGACG 
CAGGGCATGT AA 

 

Protein sequence

MKNTRLPSRA LLLAGLLAAA VPGITAEAQT AAKRTAVARP AMKAAESAVA LNRVLVFSRT 
KGYRHGSIPA GKLAIMKLGK ENGFAVDTTE DASKFTEANL KQYSAVIWLS TTGDVLDDAQ 
QAAFERYIQA GGGYVGIHAA ADTEYDWPWY NKLAGAYFLQ HPKQQNAEIE IVDKNHPSTK 
MLPDRWKRWD EWYSYKSIQP DLKVLGKLDE KTYEGGKNGD NHPFIWHHDF DGGKAFYTGG 
GHTDESYADP LFLQHILGGI KSVMATSLKF GQAKTLPFPE ENRFERQILT AGLDEPTELV 
VLDNGKVLFA ERKGALKLYD PKKNSVKVVA NFPVFTKFEY GLMGLNVDPN FKQNKWVYAF 
YSPITGKTVA DTAQHLSRFV YDDVRDTLLM NTEKVLLTVP VKRDGCCHTG GSIAWDRKGN 
LYLSTGDDTN PFNSNGFAPI DERPGRSGWD ARLTSSNTND LRGKIMRIHP EADGTYTIPE 
GNLFPKGTPK TRPEIYVMGN RNPYRISVDQ RTGFLYWGEV GPDAGENSEK YGPRGHDEVN 
QARKAGYYGW PLFVADNRPY NTRTFADSTT GPLFDPQKPI NNSPNNTGLT ELPPAQKAYI 
YYPYADSPEF GPIVGKGGRN AMGGPVYYYD DYAESSVKFP RHYDGKFFAY DWIRDWIHPV 
TMKENGDFVK METFMPSTPF SHVIDMQFAN DGSLYTLEYG QRWFAANPDA RLSRITYNAG 
NRKPVAIASA SKTVGSAPLT VKFDSKGSMD YDGDALKYSW SFGNGMPKQT AANPTVTFSK 
PGTYPATLTI TDAAGNVASR TMEIKVGNAE PKVEVAVAGN KTFYFPDKPV KYAVNVVDKE 
DGTLKKGISP DDVTMTIDYL EGFDKTMLAQ GHQANLGFST GKRLIELSDC KACHAIDKKS 
IGPAYIDVAK KYKGVAQIES KLVRKVINGG GGVWGEQAMS AHPQLKESEV ADMVGYILSL 
ADEKKINRQP LAGDYVPAQQ KKAGSYILTA SYTDRGNGVI GPLTSSTSLA LRSPMVKAVS 
ADGKQDISQF DMPKVGPAAI GTKSGSYLAF NDIDLTGIQS ISPTVFASNN QVAGGKLEAR 
LDSPTGTLLG EAEVKQGTQG AVNLPFRQPV SGIHKLYLVF VNPEAKQKPL FAVDQVQFST 
QGM