Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_3102 |
Symbol | |
ID | 8726855 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | - |
Start bp | 3762128 |
End bp | 3766384 |
Gene Length | 4257 bp |
Protein Length | 1418 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | |
Product | signal transduction histidine kinase with CheB and CheR activity |
Protein accession | YP_003387912 |
Protein GI | 284037982 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCCAGTC AACGTTCTTT AAACGCTATA AACTCCTCAA CGGTATCTTC GATTCCAGTA GTCGCTATCG GTGCATCGGC CGGTGGACTG GAAGCTTTTT CTGAACTCCT AAACCATCTT TCGCCAGCTA CCGGTCTGGC TTACGTTTAT ATCCAACACC TTAACACATC GGCTGAAAGA CATCTGTCGT CTATTCTGGG CCGGACAACA GAAATGAATG TTAAGGAAGC AGAACACCTG GTGAAAATTG AGGCCAATAC GGTTTATATA ATTCCGCCGG ACAAAAATAT GGAAATCGTG GATGGGGTAC TGACTCTCAT GCCACGCCGA AAGAAAGCCG TAAAAGGAGA GTCTGCGGAG GACGTTCAAC CCCCGCACAT GCCCGTCGAT CAGTTCTTTA CGTCCCTGGC CGAACGGCAG AAGGAGGGTG CCATTGGTAT CGTGCTTTCC GGAATGGCCC ACGATGGAAC GCTGGGCCTG AAAGCGATTA AAGTAGCGGG TGGCATTACG ATTGTACAGG ACTCATCCGC AAAATTTCAG GGGATGCCCC AGTCGGCCAT TGCAGAAGGG GTCGTCGATA TGATTCTATC GCCAGCCGAA ATAGCGCACG AATTGGAACA TCTTAGTAAG CAAGCCGCTA TTTTTGAGCA AACGGTCATA GCCGAAAGTC ATGCCGAACC TGATGCTAAT GAATTAACAG AATCGCCCAG TGAGGAATTG CAGCCCATCA TTCAGTTTCT GCGACGGGCT ATAGGTGTCG ACTTCAGCAA TTATAAAATG ACTACCATTC GCCGGCGGAT TATTCGGCGT ATGTTACTGT ACAAACTCGA CACGCTCAAA GCGTATTTAC AGTACCTGCG CGAGCATCCC ACCGAGCCGG GTCTGCTCTA CAATGATTTG CTGATCAATG TAACCAGCTT TTTTCGGGAT GAGGAAACCA TGGAGTTTCT GAAGGTGAAT ATTATTCCCG AACTCATCAG GCAAAAAAAC GACCGTCTCC CTTTACGTAT CTGGGTACCC GGTTGCTCAA CAGGGCAGGA GGCCTATTCG CTGGCCATGC TCATGCTGGA AACGCTCGAT AAAGAAGCGC CGGGCGTGAC CATTCAGATT TTTGCTACCG ACCTCAGCGA AAACGCCATT AACCGGGCCC GGCAGGGGCT CTACTCTGTT AGTGAGGTGG CGAACATACC GCCCAAACGA CTTCAGCGCT TTTTTACAAA GCACCAGTCG ATGTATCAGA TCAACAAGAC GGTCCGGGAT ATGTGCGTGT TTGCCCCGCA CAATATATTT AAAGATCCCC CTTTTTCCCG AATTGACCTG ATCAGCTGCC GTAATCTGCT GATTTACCTG AATACCCTGT TACAACGAAA AGCACTCATT ACGTTTCACT ATGCATTGAA TCATGACGGG TATCTACTGC TGGGTAAATC AGAAACGGTA TCAGCTTCTT CGGCACTGTT CAGGCCCATT GACAAAAATT ATAAGATATT TGTCCGTAAG AATGATCGAT CTGCTGGGGT AGTAGTGAGC CAGGTAGTTA TTGATCGGAA AGATGGGCAG GAGCAATCCC GCTCGCCAAG CCTCAGGTCG AGCGATGGAG GGAGCCCTAA ATATCAACCA GGTAAAGCAC GCCAGACTGT GAACGAGTTA GACAAGATTG TGGACCAGGT ACTGCTCCGC CAATTTACGC CCGCCAGTGT GGTGGTAGAT CAGGAACTGG ATATTCTTCA GTTTCGGGGA GAAACCAGCC TGTTTTTGGA ACATGTGTCG GGGCGTGCCA GCCTGAATCT GTCGAAAATG GCTCGTCCCG CCCTGGCCTT CGAAATTCGG AATGCGGTAC GAAAAGCCCG GAAATCGGGG CAGAAAGAAA GCAGGACAGG CATCGAAATA ACGGTGAGCG GCCGAAAATA CCTGGTTTCT ATTGAGGTAG TGCCGTTGAA CGACGCTACC GAAGGGCGTT TATTTTTAAT CCTGTTTCGG GAGGAGCATG GCCTGCCAAC GGACGACCTG GCCTCGGTCA GCGGCCGAAA TAACCGGGTC AAACAACTGG AAGAAGAACT GGCCACGATG CGGGAGGACA TGCGCGCCAT TATTGAAGAG CATGAAATTG CCAGCGAAGA ACTTCAGTCG GTCAACGAAG AGATCGTGAG CAGCAATGAA GAGCTGCAGA GCATCAACGA AGAGCTGGAA ACCAGCAAGG AAGAGATAGA ATCGACCAAC GAGGAGTTGC AGACCATCAA TCAGGAATTG CAGATACGCA ATGACCAGTT GGCTGAAGCG TACATGTACG CCGAAGCTAT TTTTTCGACC ATCAGCGAAG CGACCATCGT ACTCGATAAA CACCTGCGGG TGAAGAGTGC CAACCGGGCC TTTTTTCAAA TATTCAAAAT ACCCGAAGAA GCGACCATCG GGCGGCTGAT TTATGAACTC GGCAACCGGC AGTGGGACAT TCCGCGTCTG CGCGAGTTGC TGGAGGAGGT TATCCAGAAA AATGTGCTGA TTCAATCGTT CGAGGTGAGG CACCAGTTTC CGGGAGTGGG CGAAAAAGTG ATGTTGATTC ACGCCCGCCG GGTTATTGAG CAGCACCGGC AGGAGGCCAT TCTGTTGGCT ATTGAAGATA TTACCGAGCA GCAGCAGGTA CAGCAGTTGC TGGAAGAACG GCAGGCCTGG TTTCATACCC TGATCGATAA GGCACCCATA CTGATCTGGG TTGCCGATAG CGATGGCCGG TATAGCTTTT TCAACAAAGC CTGGCTCGAT TATACCGGTC GGTCGTCCGA GCAGGAAACT GGGCAGGGCT GGATGATGGA TATTCATCCT GAAGACCGAG CCGCCTACAT TGCTACGGTC ATCACCAACT TTGGGGCCCG CCAGCCATAC CAGGCCGAAT ATCGTCTGAA ACGGAATGAT GGCGAATACC GCTGGATGAT GGAAAATGGC CAGCCGACCT TCGATACCGA CGGTAATTTT AGCGGATACA TTGGTACCTG CGCTGAAGTT CATGTGCAGA AAAGCCTCAA CCAGGAGCTG GATAGCCGGG TGCAGTCTCG CACCAAAGAA CTGACCAAAG CCAATTCGCA GCTTCTGAAA TCCAATACAG AACTGGCACA AACTGCCGAA AATCTACAGG CCGTACTTAA TACATCGCCA GCGGCTATCG GCCTGCTGAA AGCTGTACGA ATACCGGAAG GCGATTTAGT TGATTTTAAG GTGATTGTCT GTAATCAGAA ATTCGCTCAG ATGGCCCATC AGCCAATTTC CAATCTGGCA GGAACATTAG CGACCGAACT GGCACCCGTG CTGTGGCAGG AAGATACCCT GAACCAACTG CGGCAGGTTC ATAGAACCGG CAAAGTGGCT TATCGGGAAC AGCATACCCA AATAGCCGGT TATGACCATT GGCTGGGTAT ATCGATCGAT AAACATGACG ATGGTGTCAT CCTGACCGGG TTGGACATTA CGGCCTTAAA GCAGGCAGAG ATTCAACAGG ATCGCTGGAT TCAGGAACTG GCACATTCCC AGAAAACGAT GCAGGATCTG GAGCAGATGC GTCGCTATGT TCGGGAGCGG GGTGAGTTTT TACGGGCTAC CTCGCACGAT CTGCGCGGTA GTTTCGGGGT TATTCAGGGG GCAGCCGCTC TTCTCAACCT GATGGATACC AAAGAGGAGC GGGAGCAGAT GCTGAGTATG CTCAACCGAA ACCTGGGTCA GGTAACATCC CTGCTGACTC AGCTTCTGGA CTATTCCCGG CTGGAAGCCG GTCAGGAACA GGTATTCAGC CAGTCGTTCG ATGCGTCGCA TCTGTTTAGG GAGTTAAGCA CGAGTATGGA GCCTTTGGCT AAAGACCGAG GGCTTTGGTT AAAAGTACAC GGTCCCGACA CCCTGCCCGT TACCGGCGAC ATGGTAAAAG TGCAGCGTAT TGCTCAAAAC CTTATTCTGA ATGCGTTGAA ATACACCCGC GAGGGGGGAG TAACCATATC GTGGGAGTTG GGCGAGGGCA ATACCGGCTG GCAATTCAGT GTGTCAGATA CGGGTCCCGG TTTGCCCGAA GAAGCCGCCC GACAGCTTGT CGATTCACCT AATTCAGGGT CGCCTAATGC TACTAAATTG GAGTTAGCAC CCAAAGAAGG TGGTTCTGGT GAAGGAATCG GTCTGTCAAT CGTCAGGCAG CTCAGCAATT TGCTGGGGGC CACCTTATCT GTAGAAAGCA GTATGGACAA AGGGACATTG ATTGAAATAC GCTTTTCTAA ACAGTAG
|
Protein sequence | MPSQRSLNAI NSSTVSSIPV VAIGASAGGL EAFSELLNHL SPATGLAYVY IQHLNTSAER HLSSILGRTT EMNVKEAEHL VKIEANTVYI IPPDKNMEIV DGVLTLMPRR KKAVKGESAE DVQPPHMPVD QFFTSLAERQ KEGAIGIVLS GMAHDGTLGL KAIKVAGGIT IVQDSSAKFQ GMPQSAIAEG VVDMILSPAE IAHELEHLSK QAAIFEQTVI AESHAEPDAN ELTESPSEEL QPIIQFLRRA IGVDFSNYKM TTIRRRIIRR MLLYKLDTLK AYLQYLREHP TEPGLLYNDL LINVTSFFRD EETMEFLKVN IIPELIRQKN DRLPLRIWVP GCSTGQEAYS LAMLMLETLD KEAPGVTIQI FATDLSENAI NRARQGLYSV SEVANIPPKR LQRFFTKHQS MYQINKTVRD MCVFAPHNIF KDPPFSRIDL ISCRNLLIYL NTLLQRKALI TFHYALNHDG YLLLGKSETV SASSALFRPI DKNYKIFVRK NDRSAGVVVS QVVIDRKDGQ EQSRSPSLRS SDGGSPKYQP GKARQTVNEL DKIVDQVLLR QFTPASVVVD QELDILQFRG ETSLFLEHVS GRASLNLSKM ARPALAFEIR NAVRKARKSG QKESRTGIEI TVSGRKYLVS IEVVPLNDAT EGRLFLILFR EEHGLPTDDL ASVSGRNNRV KQLEEELATM REDMRAIIEE HEIASEELQS VNEEIVSSNE ELQSINEELE TSKEEIESTN EELQTINQEL QIRNDQLAEA YMYAEAIFST ISEATIVLDK HLRVKSANRA FFQIFKIPEE ATIGRLIYEL GNRQWDIPRL RELLEEVIQK NVLIQSFEVR HQFPGVGEKV MLIHARRVIE QHRQEAILLA IEDITEQQQV QQLLEERQAW FHTLIDKAPI LIWVADSDGR YSFFNKAWLD YTGRSSEQET GQGWMMDIHP EDRAAYIATV ITNFGARQPY QAEYRLKRND GEYRWMMENG QPTFDTDGNF SGYIGTCAEV HVQKSLNQEL DSRVQSRTKE LTKANSQLLK SNTELAQTAE NLQAVLNTSP AAIGLLKAVR IPEGDLVDFK VIVCNQKFAQ MAHQPISNLA GTLATELAPV LWQEDTLNQL RQVHRTGKVA YREQHTQIAG YDHWLGISID KHDDGVILTG LDITALKQAE IQQDRWIQEL AHSQKTMQDL EQMRRYVRER GEFLRATSHD LRGSFGVIQG AAALLNLMDT KEEREQMLSM LNRNLGQVTS LLTQLLDYSR LEAGQEQVFS QSFDASHLFR ELSTSMEPLA KDRGLWLKVH GPDTLPVTGD MVKVQRIAQN LILNALKYTR EGGVTISWEL GEGNTGWQFS VSDTGPGLPE EAARQLVDSP NSGSPNATKL ELAPKEGGSG EGIGLSIVRQ LSNLLGATLS VESSMDKGTL IEIRFSKQ
|
| |