| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_2794 |
|---|
| Symbol | |
|---|
| ID | 8726544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 3376829 |
|---|
| End bp | 3379132 |
|---|
| Gene Length | 2304 bp |
|---|
| Protein Length | 767 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_003387608 |
|---|
| Protein GI | 284037678 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.470571 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTGCC CTCAACAGCC TGCTGATACG CCTGTTAAGC TGACCCAGCG ACTTGATCAT
GACTTTGCCC TCCAGGCAGC CGGTCTGGGC GTCTGGGAGT TTGACCCCCT CACTAAACAA
GTTCTCTGGG ATGACCGATG CCGTCAGTTA TTTGGCCTGG CTAAAGACAA TCAGCTACCC
TATGAGCAAG CCATCCAGTA TATCCATCCC GACGATCAGG TCCGCGTGGA TCAGGCCGTT
CAACAGGCGC TCTCGGGTCA GTCGAACGGG CAGTATGATG TGACCTTTCG AACAGTGGGG
GCCGATGATG GCCTGCTCCG GTGGGTTCGG TTCATGGGTA GGGCCGAGTT GACCCCCGCC
GGGCAGGTCC ACCGGTTTGG GGGCGTGGCA CAGGAGGTCA CCCCACAGGT GCTGGCTCAC
CATCGGCAGG CTCAAGAGAC CCAAGAGGCT CAGGACGCTT TGCAGGGCGT GCTGGCCATT
GCCGATACGG GCACCTGGAC CCTGGATGTG GCTACGGGCC TGATTTCGTA TTCGCAGCGG
CTCAAAGAAC TCTTCGAATT TACCGATGAT ACCATCGGGA TGGACCGCGT CTATAATCCC
ATTCTTGACG CTGATCAACT GCGGGTGGCT CAGGCGGTGA ACCGAGCCCT TGACCCGGCC
CTTGATGGTT ACCTGGATGA AGAGTATACG ATCGTGACCC AGCGCACGGG GCGACACCGG
ATTGTTCGGG CCCAGGCCAA ACTGTATGTC GATGAGCAGG GGCGGGCCAA CAAGCTCCAG
GGCAGCATGC GCGACGTGAC GCAGGAGCGG CATACGCAGC TGGCCCTGGA GCAGCAGGTG
CAGGCCCGCA CCCATGACCT AAATAAGGCC AATCAAGAAC TCTCGGCCAG TAATCAGAAC
CTGACACTGG CCCAACAACA ACTACAGGCC AGTCGAGCAC AATTGCAGGC GGTTATTGAT
AATGTACCGG TAGCCATTGG CTTGTATGTG GGCCGCGATC TGGTGTTGCA GGCCTATAAT
CAAACCCTGA TGGAAGTGGC GGGTAAAGGC CCCAATATTG GGGGTAAACC CATGCGCGAG
TTCATGGCCG AGTTTGAAGA CCAGGCGTAT CTGGACCTTA TGGACTCTAT CTATACCAGC
CAGCAACCCT TTCGCAGCGT AGACTCGCCG GTTCGTATCG TGCGCAATGG CATTAGCTAC
AACGAGTTTT ATAACCTGAA TCACGTTCCG CTGCTGGATG AGACCGGCCA GACGTATGCC
ATCCTGGGTA CAGCGGTCAA TGTCACCGAG CAGGTCAGGA GCCGGCAAGC GATTGAAGAG
AGTGAGACTC GTTACCGGCT TTTGTCCACT CAATTAGAAG CACTGGTGCA GGAACGAACC
CAGGAACTGA TGGCCAGTGA AGCCCGCTAC CGTCGATTAG CTGAGCAGCT GGAAGTGCAG
GTGCAGGAAC GCACCGAACA ATTGGCCGCT AGCAATGAAG AACTGGCCGC CACGAATGAA
GAATTAACGG CGACCAACGA AGATTTTGTG GCTAGCAACC AGGCCCTGGA AGGCGCCAAC
CATGACCTGT TACGCTCCAA TCAGAACCTG GAGCAGTTCG CCTACGTGGC TTCCCATGAC
TTGCAGGAAC CGCTTCGCAA AATTCAGCAG TTCGGTGATC TGCTCAAGAG TCAATACGGG
GACAGGCTGG ACGATGGAAT TGCTTACTTA GAGCGCATGC AGACCGCAGC CACTCGCATG
TCGGTGTTGA TTAAAGACTT GTTAGCCTTC TCACGGATCT CCACGACGCA GGTGATTGCT
CAACCTGTGG CGCTCAATCA GGTTGTCAAC CGGGTGTTAG ATACTTTATC GGTTGTGATG
GAGGAAAGTG GCGCGCAGGT GGAGGTGACT CGTTTGCCGG TGGTGCCGGG AGATCACTCC
CAGTTGGACC AACTGTTTCA GAACCTGTTG TCAAACGCCT TTAAGTTTCG GCGTACCAAC
CCAGCCGGAG AACTGGTTAC CCCTCAAATC CGGGTGAAGG CCAGTCTAGT TGCCGAAAGC
GAACTACCCC CTTCGTTACA CCCTTCGCGG TATGCCCAAA CCTATCACTG CATTGAGGTA
GCTGACAACG GCATTGGCTT TGAGGAGAAG TATTTGGACC GCATGTTTCA GGTGTTTCAG
CGGTTGCACG GCAAGAACGA ATATGCGGGT ACGGGTATAG GGTTGGCCAT TGTGCAGAAG
GTGGTGACCA ATCATGGGGG GGCCATCACC GCTACGAGTG AGCCAGGCCA GGGCGCTACC
TTCTTGGTGT ACTTGCCAGC CTAG
|
|---|
| Protein sequence | MSCPQQPADT PVKLTQRLDH DFALQAAGLG VWEFDPLTKQ VLWDDRCRQL FGLAKDNQLP
YEQAIQYIHP DDQVRVDQAV QQALSGQSNG QYDVTFRTVG ADDGLLRWVR FMGRAELTPA
GQVHRFGGVA QEVTPQVLAH HRQAQETQEA QDALQGVLAI ADTGTWTLDV ATGLISYSQR
LKELFEFTDD TIGMDRVYNP ILDADQLRVA QAVNRALDPA LDGYLDEEYT IVTQRTGRHR
IVRAQAKLYV DEQGRANKLQ GSMRDVTQER HTQLALEQQV QARTHDLNKA NQELSASNQN
LTLAQQQLQA SRAQLQAVID NVPVAIGLYV GRDLVLQAYN QTLMEVAGKG PNIGGKPMRE
FMAEFEDQAY LDLMDSIYTS QQPFRSVDSP VRIVRNGISY NEFYNLNHVP LLDETGQTYA
ILGTAVNVTE QVRSRQAIEE SETRYRLLST QLEALVQERT QELMASEARY RRLAEQLEVQ
VQERTEQLAA SNEELAATNE ELTATNEDFV ASNQALEGAN HDLLRSNQNL EQFAYVASHD
LQEPLRKIQQ FGDLLKSQYG DRLDDGIAYL ERMQTAATRM SVLIKDLLAF SRISTTQVIA
QPVALNQVVN RVLDTLSVVM EESGAQVEVT RLPVVPGDHS QLDQLFQNLL SNAFKFRRTN
PAGELVTPQI RVKASLVAES ELPPSLHPSR YAQTYHCIEV ADNGIGFEEK YLDRMFQVFQ
RLHGKNEYAG TGIGLAIVQK VVTNHGGAIT ATSEPGQGAT FLVYLPA
|
|---|
| |