| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_2389 |
|---|
| Symbol | |
|---|
| ID | 8726133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 2882379 |
|---|
| End bp | 2883332 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | Xylose isomerase domain protein TIM barrel |
|---|
| Protein accession | YP_003387208 |
|---|
| Protein GI | 284037278 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00521186 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATACCC TCTACACCCG ACGACGCTTT GTTACGCAGA CGGCCCTGGT CGCCAGTGCG
CTCCCGCTGG TGACCGCTTC GCTTTCCGCA CAAACTGAGA AAGCCGACCT GCCGCTCCCC
GACGTGCATA TTTTCTCGAA GCATTTGCAG TTTCTCAACT ATGCCGATAT GGCCAGTGCT
GCGGCCGAAA TGGGCTTCGC TGGTGTTGAC CTAACCGTTC GGCCGGATGG GCATGTGCGG
CCGGAGCGGG TTGAAGACGA CTTGCCGAAA GCGGTCGACG CCCTTAACAA AGCAGGGCTG
CCGCCCAAGC TCATGACAAC GGCGGTGGGT GATGCCACAA ATGCCATTGA TGTTCGGTTG
CTCAAAACAG CGTCGAAGGC TGGATTTAAG CTGTATCGGA TGAAGTGGTA TCAGTACGAC
GAACAGAAAT CCATTCCGGA GTCGATTGCG GGGTTTCAGC AGCAGTTGCG GGCATTGGGT
GAACTGAACA AATCACTGAA TCTGATTGGC TGCTACCAGA ATCATGCGGG TTTGCTGGTA
GGGGCCTCCG TCTGGGAAAT CTGGGAAATG CTGAAAACGG CAGTACCGTC GCACATGGGC
GTACAATATG ACATCCGTCA TGCCACCGTA GAGGGTGGCC AGTCCTGGCC CAACGGCCTG
CGCTTACTAC AGCCGTCTAT TAAGTCGATT GCCATTAAAG ATTTTGTCTG GTCGACGAAA
AACGGCGTAG CAACCGTACA GGACGTACCG CTGGGCGAGG GTATCGTTGA TTTTAAGCGC
TACTTTACGC TGCTCAAGAA ATATGGCATC CAGGTGCCTG TTTCTCTGCA TATTGAGTAC
CCGACGGGTG GCGCAGAACA TGGCGCAACC AAGTTGACCA TCCCCCAAAA AGAGGTGTTT
AACGCCATGA AACGGGATTT GAACCGGCTT CGTGAACTCT GGAAATCGGC TTAA
|
|---|
| Protein sequence | MDTLYTRRRF VTQTALVASA LPLVTASLSA QTEKADLPLP DVHIFSKHLQ FLNYADMASA
AAEMGFAGVD LTVRPDGHVR PERVEDDLPK AVDALNKAGL PPKLMTTAVG DATNAIDVRL
LKTASKAGFK LYRMKWYQYD EQKSIPESIA GFQQQLRALG ELNKSLNLIG CYQNHAGLLV
GASVWEIWEM LKTAVPSHMG VQYDIRHATV EGGQSWPNGL RLLQPSIKSI AIKDFVWSTK
NGVATVQDVP LGEGIVDFKR YFTLLKKYGI QVPVSLHIEY PTGGAEHGAT KLTIPQKEVF
NAMKRDLNRL RELWKSA
|
|---|
| |