Gene Slin_1945 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_1945 
Symbol 
ID8725682 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp2356484 
End bp2358943 
Gene Length2460 bp 
Protein Length819 aa 
Translation table11 
GC content56% 
IMG OID 
Productalpha-L-rhamnosidase 
Protein accessionYP_003386789 
Protein GI284036859 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.970344 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.175983 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACACG CGCCCATGAA AATAAAGTTA TCTACCTTAC TCATCCTTGT TATCACGCTG 
CTGGCGGTCA GCTCCCAGTC GATGGCGCAA TCCACCATTC GGGAAGATCT TCTGCAAAAA
CCCTGGAAAG CCCAGTGGAT TACCGGGCCG GGGCGGCCTA TCAATCGGTT TACGGCGGCA
TCGGACCTGA GTCTGAAAGA CTATGGCGTG TATAAATTCA GGAAAACCAT TGAGTTGGCC
AGTAAACCAG CTTCGTTTGT CGTCCATGTG TCGGGCGACA ACCGGTACAA ACTCTTTGTG
AATGGGAAAC AGGTAGCCCA GGGGCCAGCG AGGGGGGATC TGTACTTCTG GAATTTCGAA
ACGCTGGATT TGGCTCCTTA CCTGCAGGCG GGCCGGAATA CGGTGGCGGC TGTGGTCTGG
AACGATGGAC GGCTGAAGCC CGAAGCCCAG ATCTCTTTCC TGACGGCCTT CATCCTCCAG
GGCGATAGTC CTGCCGAGGA AATCCTGAAC ACGAACGATA GCTGGAAAAC CAGTAAGGAC
GAAAGCTACC AGCCCTTGGC TGTGCGGGTT CCTGGCTATT ACGTGGCCGG GCCTGCCGAA
CTGCTCGACA TGAGCAAGCA CCTGAAAGGC TGGGAGAAAA CCGACTACGA TGAGAGTAAA
TGGGTCAGTG CCCGCCAGAT TGGCCCCGGC GTTACTAAGG ATGCGGCTGT CAATTCGACG
GGCTGGATGC TGGTGCCCTC CCCATTGCCC GCTATGGAAA TGACAACCCA GCGGCTGGCT
ACCACCCGAA AAGCAAGCGG TGTTACTGTG CCTGCTGGTT TTCCGGCCAC GGCCACAAAA
GTGACCATTC CCGCCAACAC AACGGCGACG CTCCTGCTGG ATCAGGGCTT TCTGACCAAC
GCTTACCCAA CACTTCAGTT TAGCGGTGGG CAGGGCGCGG GCCTATCCAT CGGCTACTCG
GAAGGGCTCT ATATCCGCAA GAATGAAAAC GTCAACGGCC CAAGAGTGCC CTCGCTGCCG
AAAGGGAACC GGAACGAGGT CGACGGAAAA ATCTTTATCG GTAAGGCAGA TAGTCTCCTT
TCCGACGGAA CGGCCAATCA GGTGTACACC CCACTCTGGT GGCGAACCTA CCGGTACGTG
CAAGTGGTAG TGAGCACCAA AGCCGACCCG CTCGTGATCG ACGATATCTA CGGTACCTTT
ACGGGGTATC CGTTTACGGT CAATGCCCAG CTCAAAAGTC AGAATCCCGA GTTGGGTAAA
ATGCTCGACA TTGGCTGGCG AACTGCCCGG CTCTGCGCCT TCGAAACCTA CATGGACTGC
CCCTATTACG AACAGCTGCA ATACATTGGC GATGCCCGCA TACAAGGGCT GGTTTCGCTC
TTCTACGCCG GGGATGATCG CCTGTTGCGC TACGGGCTGA CGCTCATGGA CCATTCCCGA
CTTGCCGAAG GCATCACCCT GAGCCGGTAC CCAACGGACC TGCATCAGCA GATTCCGACG
TTCTCGCTCT GGTGGGTGGC TATGCTGCAC GATTACTATC GCTACCGCCC CGACAGCCTG
TTCATTAAAG ACAAGCTGCC CGGTGCCCGT CAGGTACTGT CGTTCTTTGA ACGCTACCAG
CAGGCCGATG GATCGCTGAA AAATGTGCCG TACTGGATAT TCACCGACTG GACGCAGGGC
AAAGGCTGGG ATTTCGGGAT GGCACCCGTC GGTCAACATG GCGAATCGGC AGTGCTCGAT
ATGCAGCTGT TGTGGACGTA TCAACTGGCC GCCGAACTTG AAAACAACAT TGGGCTGAAA
GAACTGGGCC GACAGTACAC AAGCCGGGCC GAGCAGCTTA AAAAGACCAT CCTGCGTAAA
TACTGGAACT CGGGTAGAAA CCTCTTTGCC GATACCGAAA CGAAAGATAC CTATTCGCAG
CACGCCAATT CGCTGGCTAT TCTGTCGGGG GTAACCCAGG CCAGTCAGGC GACGGCGATT
GCCAAAACGA TGCTGGCCGA TACGTCGCTG GCACCGGCTT CGATCTACTT CAAGTTTTAC
CTGCACCAGG CCCTCACCAA AGCCGGGCTG GGCGACGATT ACCTGACGTG GCTGGATAAG
TGGCGCGAAA ACATGGCATC GGGTCTGACC ACCTGGGCCG AAACGTCGAA TGTGAACACC
TCGCGCTCCG ATTGTCATGC CTGGGGATCG AGCCCCAACT TGGAGTTTTT CAGGACCGTG
CTGGGGATCG ACAGCGACGC GCCGGGTTTT GCCAAAGTAA AAATCACGCC CCATTTAGGG
TCCATTGACG CCATCAGTGG TGAAATGCCC CACCCGAACG GGAAAGTGTC GGTAGCCTAC
AAAGTGGAGA AAGGGGCGCT CAAAGCTGAT ATTACGCTTC CGCCCAAAAC AACCGGAAGT
TTTGTCTGGA AAGGAAAAAC GGCCGTACTC AACGCCGGGA AGAATACGCT GACGATGTAA
 
Protein sequence
MQHAPMKIKL STLLILVITL LAVSSQSMAQ STIREDLLQK PWKAQWITGP GRPINRFTAA 
SDLSLKDYGV YKFRKTIELA SKPASFVVHV SGDNRYKLFV NGKQVAQGPA RGDLYFWNFE
TLDLAPYLQA GRNTVAAVVW NDGRLKPEAQ ISFLTAFILQ GDSPAEEILN TNDSWKTSKD
ESYQPLAVRV PGYYVAGPAE LLDMSKHLKG WEKTDYDESK WVSARQIGPG VTKDAAVNST
GWMLVPSPLP AMEMTTQRLA TTRKASGVTV PAGFPATATK VTIPANTTAT LLLDQGFLTN
AYPTLQFSGG QGAGLSIGYS EGLYIRKNEN VNGPRVPSLP KGNRNEVDGK IFIGKADSLL
SDGTANQVYT PLWWRTYRYV QVVVSTKADP LVIDDIYGTF TGYPFTVNAQ LKSQNPELGK
MLDIGWRTAR LCAFETYMDC PYYEQLQYIG DARIQGLVSL FYAGDDRLLR YGLTLMDHSR
LAEGITLSRY PTDLHQQIPT FSLWWVAMLH DYYRYRPDSL FIKDKLPGAR QVLSFFERYQ
QADGSLKNVP YWIFTDWTQG KGWDFGMAPV GQHGESAVLD MQLLWTYQLA AELENNIGLK
ELGRQYTSRA EQLKKTILRK YWNSGRNLFA DTETKDTYSQ HANSLAILSG VTQASQATAI
AKTMLADTSL APASIYFKFY LHQALTKAGL GDDYLTWLDK WRENMASGLT TWAETSNVNT
SRSDCHAWGS SPNLEFFRTV LGIDSDAPGF AKVKITPHLG SIDAISGEMP HPNGKVSVAY
KVEKGALKAD ITLPPKTTGS FVWKGKTAVL NAGKNTLTM