| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_0527 |
|---|
| Symbol | |
|---|
| ID | 8724255 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 646686 |
|---|
| End bp | 647555 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | Xylose isomerase domain protein TIM barrel |
|---|
| Protein accession | YP_003385390 |
|---|
| Protein GI | 284035460 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000000820487 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACGAC GCAGTTTTCT AAAACAGTCT GGCCTGTTAA CGGCTGGCGC CTTAACCCTT
AGTCAAACGA ACCTTTTGGC CAACGCACCC GCTAAATTGA TCAGCCCATT CGGCGTTCAG
TTATACAGCG CCCGCGACGT AATGCCTAAA GACCCGAAAG GCGTAATGAC CGATTTAGCC
AAAATGGGCT ATAAACAATT TGAGAGTTTC AGCGGGGCAC AGGGCTTCCT GTGGGGTATG
GAACCGAAAG AAATGAAATC GTTCCTCGAC GGTATTGGTG TAAAAATGGT CAGCACACAC
TTCAACTTCC GGGGTGATAT GGAAAAACCC GATGGCCTGA AGAAAAGCAT TGACATGGCT
CATGGTGCCG GATTAACCTA CCTATTATGC CCATACATTG GGCCCCAAAA AACTTGGGAT
GACTGGAAGA AAATTGCTGA TATGTTCAAT ACCGCCGGGG AAGAAGTTAG CAAGGCGGGA
TTGAAATTTG GTTACCACAA CCACGACTAT TCATTCCGCC CCCTTGATGG TAAACTTCCG
CAGGAGTTCC TGCTGGCCAA CACCGATCCT AAAAACGTAA TGTTCGAACT GGATTTGTGC
TGGATCGACG TAGCGGGCGT AAATACCGCC GAGCATCTCA AGAAGTACGG TAAACGCTAC
GAGCTTTGCC ACGTTAAAGA TTATACGGTA CAGGGCGGCA AGCCGGTACA GAATGATTTG
GGTAAAGGCA ACGTGGATTT CAAGAAAACG CTGCGCATCG CCATGGACAG CGGTATCAAG
TATTTCCTCG TCGAGCAGGA AGAATACGCT GAATCGCCGA TGGTTAGTTT GAAGAACGAC
GCCGAGTACA TGAAGAAGCT GGCCGTGTAA
|
|---|
| Protein sequence | MQRRSFLKQS GLLTAGALTL SQTNLLANAP AKLISPFGVQ LYSARDVMPK DPKGVMTDLA
KMGYKQFESF SGAQGFLWGM EPKEMKSFLD GIGVKMVSTH FNFRGDMEKP DGLKKSIDMA
HGAGLTYLLC PYIGPQKTWD DWKKIADMFN TAGEEVSKAG LKFGYHNHDY SFRPLDGKLP
QEFLLANTDP KNVMFELDLC WIDVAGVNTA EHLKKYGKRY ELCHVKDYTV QGGKPVQNDL
GKGNVDFKKT LRIAMDSGIK YFLVEQEEYA ESPMVSLKND AEYMKKLAV
|
|---|
| |