| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_0188 |
|---|
| Symbol | |
|---|
| ID | 8723916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 251624 |
|---|
| End bp | 254299 |
|---|
| Gene Length | 2676 bp |
|---|
| Protein Length | 891 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | Ig family protein |
|---|
| Protein accession | YP_003385052 |
|---|
| Protein GI | 284035122 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAC CCTTACAAAC CTGCCGCCCA GTCCTGCGCA ACCACCTGAC GTGGATCATA
GCCGCTTCGT ATCGCGTCGC ATCCAAGTGG GCACCATGGC GCAAGAACAT ACGAGAAATT
ACCAGTTGGC CCACCCACAG TGTTAGGCCT ATCAACCTAA CCGGGCTTAT GCTCCTGGCA
GGGCTGATGC TGGGTACGAT GGGCAACTTA CAGGCCCAGA CCTGTACCAC AATCGACTAT
TTGTACCTGA ATGATCCGGG AGCAAATGTC ACCCACAAGT TTAAAATGGC ACCGACCAAT
AGTGCGCCAA CTGAGGTAAC TTCTTCCGGA GGTAACCCCT GGCTTCCGGC AGGAAAGGGG
GGAATTAGCT GGAGTCCGCA CGGCCTGGGG CAGGATTTGA ATGGAAACAT TTATATTGGT
CAAGGTGCCA GTGGGCCAAT TGCCAAGTTT AAACCGGATG GTACCCTGGT CAATCCTTCG
TTTATACCGA ATGATGGCGG CTTCAACTTT GTGTCGAAAG ACGGGTATGT GTATGTAAAT
ACCAACTTAG AAACGGATGG CAACAATGAC CGGATTACCC GCTACAAACT TTGTGACGGT
TCTGAGGCCG GCTATATCAC CCTAAAAGGT GTATCGAGTG GCGCCTATGT CTTCCAAAAT
GGAAACCTGA CCGACTGGGG GCTACAAGTT ACCGCGGATG GTACATTCTA TGCTAATGCG
GGTTTTAGTG TGCCTAGTGG CACCAGCCGA AACACGTACA TCTACCGGTT TAAGCCGACA
GAAGCTGATT GGACGGCCCA CACCCAAATA ACCGGCCATA ATCTTGGTAC CGGGCCGCTC
GCAAGCGGGA TGAGTACCAA TACAGAAGTT TGGGGGATAA CGAGCGATAA TGCCGGTAAT
ATGTACATGG TAGTTAACGA GCGTAATTCA GACGGCACTT TTGATACCTG GATATTAAAA
TACGACAGCC AATTTAATTT AATTGGTTCG GCTCATACAC CAATTGACAA AAATACCTAT
ACTCTTACCA ACCCACCTCC GCCAAGTTAC CAGGGCGCAA GAGGTATTAT TTACTACGCA
CCCTATGATC GGTTGCTGTT GGCGGGCGGT AGAAATGGCG ACTGTATCGC CAAATTCAAT
CCGAACACAA TGACATACGC GGGTGCTTTG GTGGGTTGGG AAGGGCCAGA TCAGTACCCG
AAAACCTTAC GGATTGCTAC GGAGGCCTGC CCGACAGGTT CCTTTACCGT TGACACTACC
ATTTGCAATG CCAAGGTGGG CGATCGAATA TTCCTGGCAA ATCTTATAGG TACCTGTAAA
GCCCCTATTT CAGGGACCTG GACCAAAGTG ACGGGTACGG GTATTACGTA CAACAGCTGT
GACCAGAGTT TTACGGTCGA TAATCTGGCA ACCGCCTGCA GCAAATTTAC GCTGACAAAC
GCGGGTGGCA CTTGTGGCCC ATTTACCATT ACGATAAACG TCGATTTTGC CGGTGTTACG
GCCTCCGTTA TTGCGGGCAA TCAGAACGTT TGTAGTGGGC TGGCCCCGGC ACCGTTCACC
GTCACAACGG CGGCCAAAAA TACAGGGTCA AAGCCCATCA AATACCAGTG GCAACGGAGT
ATCTCGCCTA CATCCGGTTA TGCGGATGTA ACGGGAGCAA CCTCCAGTAC GTATGTAGCC
CCGGCCGATA CGAAAACGAG GTATTATCGG GTTATTGCCA CGGCTGACGG TAACTGCGCC
ACGGCTGCCG GCAGTTGCGC TGATACCAGT AATGTCGTCA CACTTACCCT GGTTAACCCC
GTAGTTGGCA TCACGGCTAA TCCAGGTTCC TGCACGACCA GCAATAAGTA TGTGCTTTCC
GGTAACATTA CCATTACCAA TCCCATCAGT AATACTATGT TAGCTACGCT TACCGATGGT
ACGGTTACTA AAACAGTGAC CATTCCGGGC GGAGCCACCA TCGTACCGTA TTCGATGACC
TTGACTGCCG ATGGGGCCCT TCATAACATT AAAGTGAGTA CCGGCTGCGA CATAGGTCAG
ACACCGTACA CCGCTCCCCC TCCCTGTTCC CCCTGTACGC TGGCGATCAG CACGAGCAGC
CTGCCCGATG GTACAGTGGG CACGGCCTAC AACCAAACCA TTCAAACAAC CGGTGGTACC
GCTCCACTCA CCTTTGCCGT CAGTGTAGGC AGTTTGCCCG CAGGCTTATC GCTTAATCCC
ACCACGGGAG CCATCACCGG TACACCAACA GCAGCTGGCA CGGCTACCTT CACCATTCAG
GTGACCGATA GCAAATCCTG TACGGACGAG GTAGCACTAA CCATCACAAC TACGGCTACC
CCTGCCACCT GCTCCTTTCA GGCCGTGGCC ACGGCGGGTA CTTGCTTTTC CGCTACCAAC
ACTTACAATG TGACCGGCAC GATCACGCTA ACCAACAACA CGGCGGGAGG CACGGCCACC
ATCACCGATG GTTCGTCGAC AACCACCGTC TCCATCGCGC CTAATGCGAC CTCGGCGAGC
TTTGCACTGA CGGGTTTGAC ATCCAATGGG GCGGCACATA TTGTTAGGAT TTCGTTATCC
AACTGTGGCA CGGATGTCCT GGTGACGTAC ACCGCACCCG GTAGCTGTTT TTGTCAAACG
GGAAATTGTT ACCCGACTGA TGTAAAAAAG AATTAG
|
|---|
| Protein sequence | MKQPLQTCRP VLRNHLTWII AASYRVASKW APWRKNIREI TSWPTHSVRP INLTGLMLLA
GLMLGTMGNL QAQTCTTIDY LYLNDPGANV THKFKMAPTN SAPTEVTSSG GNPWLPAGKG
GISWSPHGLG QDLNGNIYIG QGASGPIAKF KPDGTLVNPS FIPNDGGFNF VSKDGYVYVN
TNLETDGNND RITRYKLCDG SEAGYITLKG VSSGAYVFQN GNLTDWGLQV TADGTFYANA
GFSVPSGTSR NTYIYRFKPT EADWTAHTQI TGHNLGTGPL ASGMSTNTEV WGITSDNAGN
MYMVVNERNS DGTFDTWILK YDSQFNLIGS AHTPIDKNTY TLTNPPPPSY QGARGIIYYA
PYDRLLLAGG RNGDCIAKFN PNTMTYAGAL VGWEGPDQYP KTLRIATEAC PTGSFTVDTT
ICNAKVGDRI FLANLIGTCK APISGTWTKV TGTGITYNSC DQSFTVDNLA TACSKFTLTN
AGGTCGPFTI TINVDFAGVT ASVIAGNQNV CSGLAPAPFT VTTAAKNTGS KPIKYQWQRS
ISPTSGYADV TGATSSTYVA PADTKTRYYR VIATADGNCA TAAGSCADTS NVVTLTLVNP
VVGITANPGS CTTSNKYVLS GNITITNPIS NTMLATLTDG TVTKTVTIPG GATIVPYSMT
LTADGALHNI KVSTGCDIGQ TPYTAPPPCS PCTLAISTSS LPDGTVGTAY NQTIQTTGGT
APLTFAVSVG SLPAGLSLNP TTGAITGTPT AAGTATFTIQ VTDSKSCTDE VALTITTTAT
PATCSFQAVA TAGTCFSATN TYNVTGTITL TNNTAGGTAT ITDGSSTTTV SIAPNATSAS
FALTGLTSNG AAHIVRISLS NCGTDVLVTY TAPGSCFCQT GNCYPTDVKK N
|
|---|
| |