| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_33020 |
|---|
| Symbol | |
|---|
| ID | 8634935 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 3675564 |
|---|
| End bp | 3677444 |
|---|
| Gene Length | 1881 bp |
|---|
| Protein Length | 626 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | |
|---|
| Product | ABC-type multidrug transport system, ATPase and permease component |
|---|
| Protein accession | YP_003316031 |
|---|
| Protein GI | 269796576 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.320333 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.191801 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAC ACCAGGGGCC CGCCCCCGCC GCAGCACCCA CGGCGCAGAC CAAGGCGCGG
CTCGCCGACC TGCTCCCGAT GGTCACCCGC CACCGCGCGC TGCTGGCGAC GGCGGTGCTC
ATCAGCCTCG TCGCCTCCGT CGCGACGCTC GTCCAGCCGC TCGTCGTCGG GCAGGTGATC
CAGCGCGTCG CGAGCGGCGA GCTGCTCGGC CCGATGGTGT GGGCGCTCGT CGGTCTCATC
GTCGCGTCCG GCCTGCTGAC CGGCATCCAG CACTACCTGC TGCGCCGCCT CGGGGCGAAC
GTCGTCCTCG GGGCCCGCCG CACGCTCGTG CACCGCATGC TGCGGCTGCC CGTCAAGGAG
TACGAGACCC GGCCCGTCGG AGACCTCGTC TCGCGGGTCG GTACCGACAC CTCGGTGCTC
GCCGTCGTGA TCTCGCAGGG CCTCGTCGAC CTCCTCGGCA GCGCCCTCGT GTTCGTCGGT
GCCCTCGTCG CCCTCGTCCT CATCGACCCG CTGCTGCTCC TCGTCTCCGG GGTGGTCATC
GGAGGGTCCG TCGTCGCGGT CACCCTGCTG TCCGGTCGCC TGCGCACCGT CACCGTCGAG
CAGCAGAAGC ACGTGGGACT GCTCGCGGCC TCGGTCAACC GGGCGCTCAC GGCGATCCGC
ACCATCCGGG CCGCGAACGC CACCGGTCGT GAGACCGACC GCATCCACGA GCACGCGGTC
GGGGCCTGGC GCGCGAACCT CGACGTCGCC CGCATCGCAG CCCTGGTGGC CCCGGTGTCC
GGGATCGCGA CCCAGGTCGC CCTCGTGACC GTGCTCGGGC TCGGCGGCGC CCAGGTCGCG
GCCGGCCGGC TCACCCTCGT CGACCTGGTG CAGTTCATCA TGTTCCTGTT CCTGCTGGTC
ATGCCCCTCG GGAACGTCTT CACGGCGATC GCCTCGGTGT CGCAGGCTCT CGGAGCCCTC
GGACGCATCC AGGAGATCAC CTCGCTGCCC CTCGAGCGCG AGGAGCGGGC CGTGCGCGCC
GACGACCTCG ACGGGTCGGG CAGCACCGAG ATCTCCTTCG AGGACGTGAG CTTCTCCTAC
ACGGGCGCCG ACGTCGCCGG AGGGGCGGCG TCGACGGCGC AGACCCTCAG CCACGTCACC
TTCGACGTGC CGCGCGGGGC CCGCGTCGCC GTCGTCGGCC CGAGCGGGGC CGGGAAGAGC
ACGGTCCTCG CGCTCCTCGC CCGGTTCTAC GACGCCGACG CCGGCACCAT CCGTGTCGAC
GGACGCGACA TCCAGACGCT CGACCACGAG ACGGTCCGGG CACGGCTCGG CTACGTCGAG
CAGGACGCCC CGGTGCTCTC GGGGACGGTG CGCGACAACC TCCTCATCTC GGCGCCCGAC
GCGACCGACG CCGAGTGCAC CGAGGTGCTC GCGGCCGTGA ACCTCGCCGG GTTCCTCGAG
TCCCGTGCCG ACGGCCTCGA CACCGTGGTC GGGGAGAGCG GCGTGCTGCT CTCGGGCGGC
GAGCGCCAGC GGCTGGCGAT CGCCCGCGCG CTGCTGCACG GCCCGCCCGT GCTCCTGCTC
GACGAGTCGA CGTCCCACCT CGACGGCCTC AACGAGCGCA TGATGCGCGA CGCGCTCGAC
ACCGCCGCCG AGGGGCGCAC CCTCCTCGTC GTCGCGCACC GGCTGTCGAC CGTCGTGGAC
TCCGACCACA TCGTCGTCGT CGACGACGGG CGCGTGGTCG GCACCGGCAC CCACGAGGAG
CTGCTGCGGA CCACACCGCT GTACGCGGCG CTCGCCGCCG AGCAGCTGCT CACCCCAGAG
ACCGACCCAG AGACCCACCC GGAGGAGGTG CTGGTCCCCA CGACCGGCAC CACCTCGACC
GACCGAGGAG CACACTCGTG A
|
|---|
| Protein sequence | MSAHQGPAPA AAPTAQTKAR LADLLPMVTR HRALLATAVL ISLVASVATL VQPLVVGQVI
QRVASGELLG PMVWALVGLI VASGLLTGIQ HYLLRRLGAN VVLGARRTLV HRMLRLPVKE
YETRPVGDLV SRVGTDTSVL AVVISQGLVD LLGSALVFVG ALVALVLIDP LLLLVSGVVI
GGSVVAVTLL SGRLRTVTVE QQKHVGLLAA SVNRALTAIR TIRAANATGR ETDRIHEHAV
GAWRANLDVA RIAALVAPVS GIATQVALVT VLGLGGAQVA AGRLTLVDLV QFIMFLFLLV
MPLGNVFTAI ASVSQALGAL GRIQEITSLP LEREERAVRA DDLDGSGSTE ISFEDVSFSY
TGADVAGGAA STAQTLSHVT FDVPRGARVA VVGPSGAGKS TVLALLARFY DADAGTIRVD
GRDIQTLDHE TVRARLGYVE QDAPVLSGTV RDNLLISAPD ATDAECTEVL AAVNLAGFLE
SRADGLDTVV GESGVLLSGG ERQRLAIARA LLHGPPVLLL DESTSHLDGL NERMMRDALD
TAAEGRTLLV VAHRLSTVVD SDHIVVVDDG RVVGTGTHEE LLRTTPLYAA LAAEQLLTPE
TDPETHPEEV LVPTTGTTST DRGAHS
|
|---|
| |