| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_32780 |
|---|
| Symbol | |
|---|
| ID | 8634911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | + |
|---|
| Start bp | 3650210 |
|---|
| End bp | 3650803 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | |
|---|
| Product | RNA polymerase sigma factor, sigma-70 family |
|---|
| Protein accession | YP_003316007 |
|---|
| Protein GI | 269796552 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.504522 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.281613 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG AGCACGAGCT CAGCGCGATG GTGCGCGGAC GCATCGGCGC GCTGACCGGC
TACGCCTACC TGCTGTGCGG GAGCGTCAAG GAGGCCGAGG ACCTCGTCCA GGACGCGTTC
GTCAAGGTGT TCAGCCGACG TCGCGCCCCC GGTGCCACGA CGTCCGAGTC CTACGTGCGC
CGCGCCATCC TCTCGATCTA CCTCGACCAG TACCGGCGCC GGCGCCGGTG GTCGGGCATC
AAGCACCTGG TGGGCGTCCC GGACCGGGAG GAGAGCACCG ACCTCGCGAC GAGCGCCCAG
CTCGACGTGG CGGTCGCCCT CGACGCGCTC ACACCACGCC AGCGGGCCTG CGTGGTGCTC
CGGTACTACG AGGACCTCAC CGTCCCGCAG GTCGCCGAGA ACCTCGGCTG CGCACCGGGG
ACCGTCAAGC GGCACCTCTC CGACGCCCAC GAGGTGCTCC GCGGGATCCT CGGCGACGAC
GTCGACCTCT CCGAGGGGGC ACCCGGCCCC CTTCGCCTGC CCGCCCCGGC ACCCCTGGCA
CCCCCAGTCC TCCCGACACC CCTGGCACCT CCGACGACAA GGACACGACT GTGA
|
|---|
| Protein sequence | MTDEHELSAM VRGRIGALTG YAYLLCGSVK EAEDLVQDAF VKVFSRRRAP GATTSESYVR
RAILSIYLDQ YRRRRRWSGI KHLVGVPDRE ESTDLATSAQ LDVAVALDAL TPRQRACVVL
RYYEDLTVPQ VAENLGCAPG TVKRHLSDAH EVLRGILGDD VDLSEGAPGP LRLPAPAPLA
PPVLPTPLAP PTTRTRL
|
|---|
| |